Locus 3548

Sequence ID X_DroMel_CAF1
Location 9,504,621 – 9,504,725
Length 104
Max. P 0.629859
window5807

overview

Window 7

Location 9,504,621 – 9,504,725
Length 104
Sequences 6
Columns 107
Reading direction reverse
Mean pairwise identity 80.84
Mean single sequence MFE -26.52
Consensus MFE -18.43
Energy contribution -19.27
Covariance contribution 0.83
Combinations/Pair 1.00
Mean z-score -1.41
Structure conservation index 0.70
SVM decision value 0.20
SVM RNA-class probability 0.629859
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 9504621 104 - 22224390
-ACUAAAUGCUUGCAC-UCCCAAU-UUAGAUCCUCCGCUGGUGGCAUGACUUUGGCAUCACCCUCACCGCCUCGAUCUUCGCCACCUUGGCCUUCGAGGCACCCAUU
-.((((((........-.....))-)))).........(((((.((......)).)))))........(((((((.....(((.....)))..)))))))....... ( -26.82)
>DroPse_CAF1 14119 107 - 1
CAUUACCCUUUCGAAUCUCUCGCUUGCAGAUUCUUCGCUGGUGGCAUGACUUUGGCAUCACCCUGACGGCCUCCAUAUUCGCGACGCUGGCCUUUGAGGCCCCCAUC
............(((((((......).)))))).(((((((.(((.((.(...((......)).).))))).))).....))))....((((.....))))...... ( -25.00)
>DroSec_CAF1 199 104 - 1
-UCGAAAUGCUUGAAC-UUCCAUU-UCAGAUCCUCCGCUGGUGGAACGACUUUGGCAUCACCCUCACCGCCUCGAUCUUCGCCACGUUGGCCUUCGAGGCACCCAUU
-.....(((((.....-((((((.-.(((........))))))))).......)))))..........(((((((.....(((.....)))..)))))))....... ( -28.10)
>DroEre_CAF1 214 105 - 1
-UCCAAAUUGUUGAAU-UCCCAUUCACAGAUCCUCCGCUGGUGGCACGACUUUGGCAUCACACUUACCGCCUCGAUCUUUGCCACUUUGGCCUUCGAGGCACCCAUU
-.......(((..((.-((((((...(((........)))))))...)).))..)))...........(((((((.....(((.....)))..)))))))....... ( -26.40)
>DroYak_CAF1 193 105 - 1
-UUUAAAGUCUUGAAU-UUUCGAUUUUAGAUCCUUCGCUGGUGGCACGACUUUGGCAUCACCCUUACCGCCUCGAUCUUCGCCACUUUGGCCUUCGAGGCACCCAUU
-(((((((((......-....)))))))))........(((((.((......)).)))))........(((((((.....(((.....)))..)))))))....... ( -27.80)
>DroPer_CAF1 14055 107 - 1
CUUUACCCUUUCGAAUCUCUCGCUUGCAGAUUCUUCGCUGGUGGCAUGACUUUGGCAUCACCCUGACGGCCUCCAUAUUCGCGACGCUGGCCUUUGAGGCCCCCAUC
............(((((((......).)))))).(((((((.(((.((.(...((......)).).))))).))).....))))....((((.....))))...... ( -25.00)
>consensus
_UCUAAAUUCUUGAAU_UCCCAAUUUCAGAUCCUCCGCUGGUGGCACGACUUUGGCAUCACCCUCACCGCCUCGAUCUUCGCCACGUUGGCCUUCGAGGCACCCAUU
......................................(((((.((......)).)))))........(((((((.....(((.....)))..)))))))....... (-18.43 = -19.27 +   0.83)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:02:07 2006