Locus 3545

Sequence ID X_DroMel_CAF1
Location 9,494,076 – 9,494,188
Length 112
Max. P 0.883965
window5803

overview

Window 3

Location 9,494,076 – 9,494,188
Length 112
Sequences 5
Columns 112
Reading direction reverse
Mean pairwise identity 94.91
Mean single sequence MFE -27.68
Consensus MFE -24.46
Energy contribution -24.74
Covariance contribution 0.28
Combinations/Pair 1.07
Mean z-score -1.46
Structure conservation index 0.88
SVM decision value 0.93
SVM RNA-class probability 0.883965
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 9494076 112 - 22224390
GGGGUCAGCUCUUCUCCGCUGCGCUUGUCAUCCCACAAACCCCAACAUAUCACGCCCCGUAAACCAAUUUGCGACUGCGCAUUAAGCGGAAGCAUAAUAAAUGCGCUUUAGC
(((((((((........))))...((((......)))))))))..........((..((((((....))))))...(((((((..((....))......)))))))....)) ( -29.50)
>DroSec_CAF1 37515 112 - 1
GGGGUCAGCUCUUCUCCGCUCCGCUUGUCAUCCCACAAACCCCACCAUAUCACGCCCCGUAAACCAAUUUGCGACUGCGCAUUCAGCGGAAGCAUAAUAAAUGCGCUUUAGC
(((((.(((........)))....((((......)))))))))..........((..((((((....))))))...(((((((..((....))......)))))))....)) ( -26.80)
>DroSim_CAF1 37414 112 - 1
GGGGUCAGCUCUUCUCCGCUCCGCUUGUCAUCCCACAAACCCCACCAUAUCACGCCCCGUAAACCAAUUUGCGACUGCGCAUUCAGCGGAAGCAUAAUAAAUGCGCUUUAGC
(((((.(((........)))....((((......)))))))))..........((..((((((....))))))...(((((((..((....))......)))))))....)) ( -26.80)
>DroEre_CAF1 37546 112 - 1
GGGGUCAGCUCUUCUCCGCUACGCUUCUCAUCCCAUGAACCCCACCAUAUCACUCCCCGUAAACCAAUUUGCGACUGCGCAUUCAGCGGAAGCAUAAUAAAUGCGCUUUAGC
(((((.(((........))).......((((...)))))))))..............((((((....))))))...(((((((..((....))......)))))))...... ( -26.80)
>DroYak_CAF1 38130 112 - 1
GGGGUCAGGUCUUUGCCGCUCCGCUUCUCAUCCCAUAAACCCCACCAUAUCACUCCCCGCAAACCAAUUUGCGACUGCGCAUUCAGCGGAAGCAUAGUAAAUGCGCUUUAGC
(((((..(((....)))((...))..............)))))..............((((((....))))))...(((((((..((....))......)))))))...... ( -28.50)
>consensus
GGGGUCAGCUCUUCUCCGCUCCGCUUGUCAUCCCACAAACCCCACCAUAUCACGCCCCGUAAACCAAUUUGCGACUGCGCAUUCAGCGGAAGCAUAAUAAAUGCGCUUUAGC
(((((.(((........)))....((((......)))))))))..............((((((....))))))...(((((((..((....))......)))))))...... (-24.46 = -24.74 +   0.28)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:02:03 2006