Locus 3544

Sequence ID X_DroMel_CAF1
Location 9,493,808 – 9,493,925
Length 117
Max. P 0.521813
window5802

overview

Window 2

Location 9,493,808 – 9,493,925
Length 117
Sequences 5
Columns 118
Reading direction reverse
Mean pairwise identity 90.72
Mean single sequence MFE -35.94
Consensus MFE -28.32
Energy contribution -29.40
Covariance contribution 1.08
Combinations/Pair 1.09
Mean z-score -1.40
Structure conservation index 0.79
SVM decision value -0.02
SVM RNA-class probability 0.521813
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 9493808 117 - 22224390
UCGAAAGGAGCCGGAAUGAAGCCGUAAAUAAUGGCGAAAGCCUCGUUUGAUGAUCCUGUGGGAGGGUCUGGUGCAUUCACUUAAUGGGGGUUAAUAUCCGAACUU-GCUGAAUGGCUA
((....))((((((((((..(((.(((((...(((....)))..)))))..((((((.....)))))).))).))))).........((((....))))......-......))))). ( -35.60)
>DroSec_CAF1 37247 117 - 1
UCGAAAGGAGCCGGAAUGAAGCCAUAAAUAAUGGCGAAAGCCUCGUUUGAUGAUCCUGUGGGAGGGUCUGGUGCAUUCACUUAAUGGGGGUUAAUAUCCGAACUC-GCUGAAUGGCUA
((....))((((((((((..(((((((((...(((....)))..)))))..((((((.....)))))))))).))))).......(.(((((........)))))-.)....))))). ( -37.80)
>DroSim_CAF1 37146 117 - 1
UCGAAAGGAGCCGGAAUGAAGCCAUAAAUAAUGGCGAAAGCCUCGUUUGAUGAUCCUGUGGGAGGGUCUGGUGCAUUCACUUAAUGGGGGUUAAUAUCCGAACUC-GCUGAAUGGCUA
((....))((((((((((..(((((((((...(((....)))..)))))..((((((.....)))))))))).))))).......(.(((((........)))))-.)....))))). ( -37.80)
>DroEre_CAF1 37290 105 - 1
UCGAAAGGAGCCAGAAUGAAGCCGUAAAUAAUGGCGAAAGCCUCGUUUGAUGAUCCUGUGGGAGGGUCUGGUGCAUUCACCCAAUGGGGGUUAAUAUCCGAGUGC-------------
(((.....((((.(((((..(((.(((((...(((....)))..)))))..((((((.....)))))).))).))))).(((...)))))))......)))....------------- ( -33.10)
>DroYak_CAF1 37856 118 - 1
UCGAAAGGAGGCGGAACGAAGUCGUAAAUAAUGGCGAAAGCCUCGUUUGAUGAUCCUGUGGGAGGCUCUGGUGCAUUCACUCAAUGGGGGUUAAUAUCCGAGCUCCGCUGAAUGGUUA
((....)).(((((((((....))).......(((....)))(((..((.(((((((.((((..((......)).....))))...))))))).))..)))..))))))......... ( -35.40)
>consensus
UCGAAAGGAGCCGGAAUGAAGCCGUAAAUAAUGGCGAAAGCCUCGUUUGAUGAUCCUGUGGGAGGGUCUGGUGCAUUCACUUAAUGGGGGUUAAUAUCCGAACUC_GCUGAAUGGCUA
((....))((((((((((..(((((((((...(((....)))..)))))..((((((.....)))))))))).))))).........((((....)))).............))))). (-28.32 = -29.40 +   1.08)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:02:02 2006