Locus 3543

Sequence ID X_DroMel_CAF1
Location 9,492,363 – 9,492,456
Length 93
Max. P 0.590562
window5801

overview

Window 1

Location 9,492,363 – 9,492,456
Length 93
Sequences 6
Columns 118
Reading direction reverse
Mean pairwise identity 75.03
Mean single sequence MFE -24.83
Consensus MFE -7.88
Energy contribution -7.52
Covariance contribution -0.36
Combinations/Pair 1.20
Mean z-score -2.27
Structure conservation index 0.32
SVM decision value 0.11
SVM RNA-class probability 0.590562
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 9492363 93 - 22224390
AC--UUGGUGACCUGUUG-GCCUAGGCCAG---------------------CUACUAACUGCAAGAAAACAACAACAAACCCACAACCGACG-GAUGACACAUCAUAAACAAAUACCG
..--..((((..((((((-((....))).(---------------------(........))..........................))))-)((((....)))).......)))). ( -16.60)
>DroSec_CAF1 35804 92 - 1
AC--UUGGUGACCUGUUGGGCCUAGGCCAG---------------------CUACUAACUGCAAGUAAACA---ACAAACCCACAACCGACGGGAUGACACAUCAUAAACAAACACUG
..--..((((.((((((((((....))).(---------------------(........)).........---.............)))))))((((....)))).......)))). ( -22.20)
>DroSim_CAF1 35703 90 - 1
AC--UUGGUGACCUGUUG-GCCUAGGCCAG---------------------CUACUAACUGCAAGUAAACA---ACAAACCCACAACCGACG-GAUGACACAUCAUAAACAAACACUG
..--..((((.((.((((-((....)))))---------------------)((((.......))))....---.................)-)((((....)))).......)))). ( -17.30)
>DroEre_CAF1 35890 90 - 1
AC--UUGGUGACCUGUUG-GCCUAGGCCAG---------------------CUACCAACUGCAAGUAAACA---ACAAACCGACAACCGACG-GAUGACACAUCAUAAACAAAUGCCG
..--((((((....((((-((....)))))---------------------)))))))..(((........---.....(((........))-)((((....)))).......))).. ( -20.50)
>DroYak_CAF1 36301 111 - 1
AC--UUGGUGACCUGUUG-GCCUAGGCCAGCUACUUGCUACCAGCUACCAGCUACCGACUGCAAGUAAACA---ACAAACCCACAAACGACG-GAUGACACAUCAUAAACAAACACCG
..--..((((.((.((((-((....))))))(((((((....(((.....))).......)))))))....---.................)-)((((....)))).......)))). ( -29.10)
>DroAna_CAF1 45481 84 - 1
UCUCUCGGUGACCUGUUG-GCCUAGGCCCG---------------------GGUCUGGGUCCGGGCCCGGG---CCAGACCAGC--UCGAUAGGA-------UGGUAAACAAAUACCA
(((.(((....)..((((-(.((.((((((---------------------((((((....))))))))))---)))).)))))--..)).))).-------(((((......))))) ( -43.30)
>consensus
AC__UUGGUGACCUGUUG_GCCUAGGCCAG_____________________CUACUAACUGCAAGUAAACA___ACAAACCCACAACCGACG_GAUGACACAUCAUAAACAAACACCG
......((((...(((((.((....))).................................................................((((...))))...))))..)))). ( -7.88 =  -7.52 +  -0.36)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:02:01 2006