Locus 3541

Sequence ID X_DroMel_CAF1
Location 9,489,997 – 9,490,089
Length 92
Max. P 0.893903
window5798

overview

Window 8

Location 9,489,997 – 9,490,089
Length 92
Sequences 5
Columns 97
Reading direction reverse
Mean pairwise identity 94.68
Mean single sequence MFE -22.47
Consensus MFE -21.21
Energy contribution -21.01
Covariance contribution -0.20
Combinations/Pair 1.10
Mean z-score -1.30
Structure conservation index 0.94
SVM decision value 0.98
SVM RNA-class probability 0.893903
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 9489997 92 - 22224390
GCACAUCAUCACGAAGUCGUGAGAACACAGAGUUUGCAU-----CACUCCAUAAAUUGCACAAAUUUACGAUCCGCAGGCUCUGAACUAGUUCCGCU
((......(((((....)))))((((.((((((((((..-----...((..((((((.....)))))).))...)))))))))).....)))).)). ( -24.80)
>DroSec_CAF1 33455 92 - 1
GCACAGCAUCACGAAGUCGUGAGAACACAGAGUUUGCAU-----CACUCCAUAAACUGCACAAAUUUACGAUCCGCGGGCUCUGAACUAGUUCCGCU
....(((.(((((....)))))((((.((((((((((((-----(........................)))..)))))))))).....)))).))) ( -22.66)
>DroSim_CAF1 33335 92 - 1
GCACAGCAUCACGAAGUCGUGAGAACACAGAGUUUGCAU-----CACUCCAUAAACUGCACAAAUUUACGAUCCGCGGGCUCUGAACUAGUUCCGCU
....(((.(((((....)))))((((.((((((((((((-----(........................)))..)))))))))).....)))).))) ( -22.66)
>DroEre_CAF1 33506 97 - 1
GCACAGCAUCACGAAGUCGUGAGAACACAGAGUAUGCAUCACAUCACUCCAUAAACUGCACAAAUUUACGAUUCGCAGGCUCUGAACUAGUUCGGUU
....(((.(((((....))))).......(((((((.....))).))))......((((...............)))))))(((((....))))).. ( -19.56)
>DroYak_CAF1 33872 92 - 1
GCACAGCAUCACGAAGUCGUGAGAACACAGAGUUUGCAU-----CACUCCAUAAACUGCACAAAUUUACGAUCCGCGGGCUCUGAACUAGUUCCGCU
....(((.(((((....)))))((((.((((((((((((-----(........................)))..)))))))))).....)))).))) ( -22.66)
>consensus
GCACAGCAUCACGAAGUCGUGAGAACACAGAGUUUGCAU_____CACUCCAUAAACUGCACAAAUUUACGAUCCGCGGGCUCUGAACUAGUUCCGCU
((......(((((....)))))((((.((((((((((.....................................)))))))))).....)))).)). (-21.21 = -21.01 +  -0.20)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:01:59 2006