Locus 3539

Sequence ID X_DroMel_CAF1
Location 9,487,448 – 9,487,549
Length 101
Max. P 0.993844
window5795

overview

Window 5

Location 9,487,448 – 9,487,549
Length 101
Sequences 5
Columns 103
Reading direction reverse
Mean pairwise identity 90.78
Mean single sequence MFE -46.92
Consensus MFE -39.88
Energy contribution -40.24
Covariance contribution 0.36
Combinations/Pair 1.04
Mean z-score -2.24
Structure conservation index 0.85
SVM decision value 2.43
SVM RNA-class probability 0.993844
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 9487448 101 - 22224390
GGGCGGUGGUCCUGAGCGUGGGCGUGGCAGUCGCAGCAUGCCCUGCGUGGGCGGAAGCAUUCGUCUGCCCACGCGAAUGAAUGAA-AGUAACUAC-GCUGGCU
((((....))))..((((((((((((((....))..)))))))((((((((((((........))))))))))))..........-.......))-))).... ( -46.10)
>DroSec_CAF1 30609 100 - 1
GGGCGGUGGUCCUGAGUGUGGGCGUGGCAGUCGCAGCAUGCCC-GCGUGGGCGGAAGCAUUCGUCUGCCCACGCAAAUGAAUGAA-AGCAACUAC-GCCGGCU
((.(((((......((((((((((((((....))..)))))))-(((((((((((........)))))))))))...........-.)).))).)-)))).)) ( -46.90)
>DroSim_CAF1 30517 100 - 1
GGGCGGUGGUCCUGAGCGUGGGCGUGGCAGUCGCAGCAUGACC-GCGUGGGCGGAAGCAUUCGUCUGCCCACGCAAAUGAAUGAA-AGCAACUAC-GCCGGCU
((((....)))).....((.(((((((..((((.....)))).-(((((((((((........)))))))))))...........-.....))))-))).)). ( -44.40)
>DroEre_CAF1 30655 102 - 1
GGGCGGUGGUCCUGAGGGUGGGCGUGGCAAUCGCAGCAUGCCCCGCGUGGGCGGAAGCAUUCGUCUGCCCACGCAAAUAGAUGAA-AACAACUACUGCUGGCU
.(((((((((..((...(.(((((((((....))..))))))))(((((((((((........)))))))))))...........-..))))))))))).... ( -47.70)
>DroYak_CAF1 30891 103 - 1
GGGCGGUGGUCCUGCGGGUGGGCGUGGAAAUCGCAGCAUGCCGCGCGUGGGCGGAAGCAUUCGUCUGCCCACGCGAGCAGAUGAAAAACAACUACUGCUGGCG
.(((((((((.((((.....((((((..........)))))).((((((((((((........)))))))))))).)))).((.....))))))))))).... ( -49.50)
>consensus
GGGCGGUGGUCCUGAGCGUGGGCGUGGCAGUCGCAGCAUGCCC_GCGUGGGCGGAAGCAUUCGUCUGCCCACGCAAAUGAAUGAA_AGCAACUAC_GCUGGCU
.(((.(((((.........(((((((((....))..))))))).(((((((((((........)))))))))))................))))).))).... (-39.88 = -40.24 +   0.36)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:01:56 2006