Locus 3536

Sequence ID X_DroMel_CAF1
Location 9,480,181 – 9,480,287
Length 106
Max. P 0.505281
window5790

overview

Window 0

Location 9,480,181 – 9,480,287
Length 106
Sequences 5
Columns 106
Reading direction forward
Mean pairwise identity 86.42
Mean single sequence MFE -28.18
Consensus MFE -24.30
Energy contribution -24.58
Covariance contribution 0.28
Combinations/Pair 1.21
Mean z-score -1.39
Structure conservation index 0.86
SVM decision value -0.06
SVM RNA-class probability 0.505281
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 9480181 106 + 22224390
AUGAAUCCUCGUUACGUGGCUGCCAAAGUGUGUGGGAUGCCGGAGAAAUUGUAUAUUGUUAUAUGAAGUUUAUUCCGGGCUAAGGCUAAAAUUAGCAACUUUGGCG
......((.((...)).))..((((((((..........(((((((((((.(((((....))))).))))).))))))(((((........))))).)))))))). ( -31.00)
>DroSec_CAF1 23400 106 + 1
AUGAAUCCUCGUUACGUGGCUGCCAAAGUGUGUGGGAUGCCGGAGAAAUUGUAUAUUGUUAUAUGAAGUUUAUUCCGGGCUAAGGCUAAAAUUAGUAACUUUGGCG
......((.((...)).))..((((((((..........(((((((((((.(((((....))))).))))).))))))(((((........))))).)))))))). ( -29.00)
>DroSim_CAF1 23531 101 + 1
-----UACUCGUUACGUGGCUGCCAAAGUGUGUGGGAUGCCGGAGAAAUUGUAUAUUGUUAUAUGAAGUUUAUUCCGGGCUAAGGCUAAAAUUAGUAACUUUGGCG
-----................((((((((..........(((((((((((.(((((....))))).))))).))))))(((((........))))).)))))))). ( -28.20)
>DroEre_CAF1 23520 98 + 1
AUGAAUCCUCGUUACGUGGCUGCAGAAGC--------AGCCGGGAAAAUUGUAUAUUGUUAUGUGACGUUCAUUCCGGGCUAAUGCUAAAAUUAGCUACUUUGGCG
..((((...((((((((((((((....))--------)))).....(((........)))))))))))...))))...(((((.((((....))))....))))). ( -28.80)
>DroYak_CAF1 23414 106 + 1
AUGAAAACUCGUUACAUGUCCGCAGAAGUGUGUGGGAUGCCGGCAAAAUUGUAUAUUGUUAUAUGAAGUUUAUUCCGGGCUAAAGCUAAAAUUAGCAGCAUUGGCG
..............(((.((((((......)))))))))((((..(((((.(((((....))))).)))))...))))(((((.(((.........))).))))). ( -23.90)
>consensus
AUGAAUCCUCGUUACGUGGCUGCCAAAGUGUGUGGGAUGCCGGAGAAAUUGUAUAUUGUUAUAUGAAGUUUAUUCCGGGCUAAGGCUAAAAUUAGCAACUUUGGCG
.....................((((((((..........(((((((((((.(((((....))))).))))).))))))(((((........))))).)))))))). (-24.30 = -24.58 +   0.28)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:01:52 2006