Locus 3534

Sequence ID X_DroMel_CAF1
Location 9,477,851 – 9,477,949
Length 98
Max. P 0.574545
window5787

overview

Window 7

Location 9,477,851 – 9,477,949
Length 98
Sequences 4
Columns 98
Reading direction forward
Mean pairwise identity 86.81
Mean single sequence MFE -17.57
Consensus MFE -12.79
Energy contribution -13.41
Covariance contribution 0.63
Combinations/Pair 1.10
Mean z-score -1.50
Structure conservation index 0.73
SVM decision value 0.08
SVM RNA-class probability 0.574545
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 9477851 98 + 22224390
UCUUUCCCGAUGUAGUUCUGCUUUUCGGAGUAUGUGCACACACGUAUAUACAUAUGUAUGUACAUCAACCAUGCCAUCAUUAUUUAGUUUAUUGGCCU
......((((.(((....)))...)))).....(((....)))((((((((....)))))))).........((((................)))).. ( -20.49)
>DroSec_CAF1 21071 94 + 1
UCUUUCCCGAUGUAUUUCUGCUUUUCGGAGUAUGUGCACACACGUAUAU----AUGCAUGUAUAUCAUCCAUGCCAUCAUUAUUUAGUUUAUUGGCCU
........(((((((.((((.....))))((((((((......))))))----))....)))))))......((((................)))).. ( -17.09)
>DroSim_CAF1 21284 94 + 1
UAUUUCCCGAUGUAUUUCUGCUUUUCGGAGUAUGUGCACACACGUAUAU----AGGUAUGUAUAUCAUCCAUGCCAUCAUUAUUUAGUUUAUUGGCCU
......((((.(((....)))...)))).(((((((....)))))))..----.((.(((.....)))))..((((................)))).. ( -18.09)
>DroYak_CAF1 20979 84 + 1
UCUUUCAAGCUAUAUU--UGCUUUUCGAAGUAUGUGCACACACGUAUAU------------AUAUCAUCCAUGCCAUCAUUAUUUAGUUUAUUGGCCC
......((((......--.))))...((.((((((((......))))))------------)).))......((((................)))).. ( -14.59)
>consensus
UCUUUCCCGAUGUAUUUCUGCUUUUCGGAGUAUGUGCACACACGUAUAU____AUGUAUGUAUAUCAUCCAUGCCAUCAUUAUUUAGUUUAUUGGCCU
........((((((..((((.....))))(((((((....))))))).............))))))......((((................)))).. (-12.79 = -13.41 +   0.63)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:01:49 2006