| Sequence ID | X_DroMel_CAF1 |
|---|---|
| Location | 9,453,425 – 9,453,518 |
| Length | 93 |
| Max. P | 0.857263 |
| Location | 9,453,425 – 9,453,518 |
|---|---|
| Length | 93 |
| Sequences | 4 |
| Columns | 105 |
| Reading direction | reverse |
| Mean pairwise identity | 80.47 |
| Mean single sequence MFE | -36.55 |
| Consensus MFE | -24.85 |
| Energy contribution | -25.35 |
| Covariance contribution | 0.50 |
| Combinations/Pair | 1.17 |
| Mean z-score | -1.97 |
| Structure conservation index | 0.68 |
| SVM decision value | 0.81 |
| SVM RNA-class probability | 0.857263 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 9453425 93 - 22224390 CACAGUGAGCUAAAGCGUCGCCUGAAGGCCGAGCAAAAGGCCAAGGAGAAGGCUGAGAAGGCGGCCG------------CUGCGCCGGCGGAAAAUACUGCUGGC ..(((((.((....))(((((((...((((........))))..((......))....)))))))))------------))).((((((((......)))))))) ( -39.50) >DroVir_CAF1 1748 99 - 1 UGCAGUGAGCUGAAACGCCGUCUGAAGGCUGAACAAAAGGCCAAGGAAAAGGCUGAGAAGGAGGCAACGCGCUCGGCUGCUGCGCCACCAGAAG------CCGGU .(((((.((((((...(((.(((...((((........))))..)))...))).........(....)....)))))))))))...(((.....------..))) ( -31.90) >DroSec_CAF1 2035 93 - 1 AACAGUGAGCUAAAGCGUCGCCUGAAGGCCGAGCAAAAGGCCAAGGAGAAGGCUGAGAAGGCGGCCG------------CUGCGCCGGCUGAAGGUGCUGCUGGC ....((.(((...(((.((.(((...((((........)))).))).)).(((((......))))))------------))(((((.......))))).))).)) ( -37.40) >DroSim_CAF1 1727 93 - 1 AACAGUGAGCUAAAGCGUCGCCUGAAGGCCGAGCAAAAGGCCAAGGAGAAGGCUGAGAAGGCGGCCG------------CUGCGCCGGCUGAAGGUGCUGCUGGC ....((.(((...(((.((.(((...((((........)))).))).)).(((((......))))))------------))(((((.......))))).))).)) ( -37.40) >consensus AACAGUGAGCUAAAGCGUCGCCUGAAGGCCGAGCAAAAGGCCAAGGAGAAGGCUGAGAAGGCGGCCG____________CUGCGCCGGCUGAAGGUGCUGCUGGC ..(((...((....))(((((((...((((........))))..((......))....)))))))..............))).((((((..........)))))) (-24.85 = -25.35 + 0.50)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:01:44 2006