| Sequence ID | X_DroMel_CAF1 |
|---|---|
| Location | 9,445,224 – 9,445,328 |
| Length | 104 |
| Max. P | 0.927772 |
| Location | 9,445,224 – 9,445,328 |
|---|---|
| Length | 104 |
| Sequences | 4 |
| Columns | 105 |
| Reading direction | reverse |
| Mean pairwise identity | 93.14 |
| Mean single sequence MFE | -47.20 |
| Consensus MFE | -41.00 |
| Energy contribution | -42.12 |
| Covariance contribution | 1.12 |
| Combinations/Pair | 1.06 |
| Mean z-score | -2.12 |
| Structure conservation index | 0.87 |
| SVM decision value | 1.19 |
| SVM RNA-class probability | 0.927772 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 9445224 104 - 22224390 UUUGGCAACACGUGCGGCACUC-ACACACACACACUCGCGUAGGAGGCUCGUCGCCGGCCUGCGCAUGUGUGUUGGUGUGUCGGUGUGGGCCCGCUCUUUCGCGC ..((....)).((((((((((.-((((((((((((..(((((((.(((.....)))..)))))))..))))))..)))))).)))))(((....)))...))))) ( -52.10) >DroSec_CAF1 25971 104 - 1 UUUGGCAACACGUGCGGCACUU-ACACACACACACUCGCGUAGGAAGCUCGUCGCCGGCCUGCGCAUGUAUGUUGUUGUGUCGGUGUGGGACCACUCUCUCACGC ..((....))....((((((..-(((.(((.(((...(((((((..((.....))...))))))).))).)))))).))))))((((((((......)))))))) ( -38.40) >DroEre_CAF1 27490 104 - 1 UUCGGCAACACGUGCGGCACUCAACACACACACAUUCGCGUAGGAGGCUCGUCGCCGGCCUGCGCAUGUGUGUUGGUGUGUCGGUGUGGGC-CGCUCUCUCGCGC ...(((.((((...((((((((((((((((.......(((((((.(((.....)))..))))))).)))))))))).))))))))))..))-)((......)).. ( -49.40) >DroYak_CAF1 27185 102 - 1 UUCGGCAACACGUGCGGCACUC---ACACACACACUCGCGUAGGAGGCUCGUCGCCGGCCUGCGCAUGUGUGUUGGUGUGUCGGUGUGGGCCCGCUCUCUCGCGC ...(((.((((...((((((.(---.((.((((((..(((((((.(((.....)))..)))))))..))))))))).))))))))))..)))(((......))). ( -48.90) >consensus UUCGGCAACACGUGCGGCACUC_ACACACACACACUCGCGUAGGAGGCUCGUCGCCGGCCUGCGCAUGUGUGUUGGUGUGUCGGUGUGGGCCCGCUCUCUCGCGC ...(....)..(((((((((.(.((((((((((((..(((((((.(((.....)))..)))))))..))))))..)))))).)))))(((....)))...))))) (-41.00 = -42.12 + 1.12)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:01:38 2006