| Sequence ID | X_DroMel_CAF1 |
|---|---|
| Location | 9,444,466 – 9,444,565 |
| Length | 99 |
| Max. P | 0.724091 |
| Location | 9,444,466 – 9,444,565 |
|---|---|
| Length | 99 |
| Sequences | 4 |
| Columns | 104 |
| Reading direction | forward |
| Mean pairwise identity | 92.38 |
| Mean single sequence MFE | -30.18 |
| Consensus MFE | -27.12 |
| Energy contribution | -26.88 |
| Covariance contribution | -0.25 |
| Combinations/Pair | 1.05 |
| Mean z-score | -1.53 |
| Structure conservation index | 0.90 |
| SVM decision value | 0.41 |
| SVM RNA-class probability | 0.724091 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 9444466 99 + 22224390 UGGAAAAGUUUGGCCGCGUCGUCGUCGAUGGCAAUCAAUAUCAAUAAUGGCACCUAACAAAGGGCCAGGCGACAUAUA----GAGAUACGCAGUUUAACUGCG- ......((((..((.((((.((((((((((........)))).....((((.(((.....)))))))))))))((...----...)))))).))..))))...- ( -28.20) >DroSec_CAF1 25237 99 + 1 UGGAAAAGUUUGGCCGCGUCGUCGUCGAUGGCAAUCAAUAUCAAUAAUGGCACCUAACAAAGGGUCAGGCGACAGAUA----GAGAUACGCAGUUUUACUGCG- .......(((((..(((((((((...))))))...............((((.(((.....))))))).))).))))).----......(((((.....)))))- ( -27.00) >DroEre_CAF1 26764 103 + 1 UGGAAAAGUUUGGCCGCCUCGUCGUCGAUGUCAAUCAAUAUCAAUAAUGGCACCUAACAAAGGGUCAGGCGACAGUUACGCAGAGAUACGCAGUUCUACUGCG- ....................(((((((((((......))))).....((((.(((.....))))))))))))).....((((((((........))).)))))- ( -28.60) >DroYak_CAF1 26376 104 + 1 UGGAAAAGUUCGGCCGCUUCGUCGUCGAUGGCAAUCAAUAUCAAUAAUGGCACCUAACAAAGGGCCAGGCGACAGAUACGCGGAGAUACGCAGUUUUACUGCGA .........((..((((.((((((((((((........)))).....((((.(((.....))))))))))))).))...)))).))..(((((.....))))). ( -36.90) >consensus UGGAAAAGUUUGGCCGCGUCGUCGUCGAUGGCAAUCAAUAUCAAUAAUGGCACCUAACAAAGGGCCAGGCGACAGAUA____GAGAUACGCAGUUUUACUGCG_ ....................((((((((((........)))).....((((.(((.....)))))))))))))...............(((((.....))))). (-27.12 = -26.88 + -0.25)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:01:35 2006