Locus 3525

Sequence ID	X_DroMel_CAF1
Location	9,441,589 – 9,441,683
Length	94
Max. P	0.538661

overview

Window 1

Location	9,441,589 – 9,441,683
Length	94
Sequences	5
Columns	94
Reading direction	reverse
Mean pairwise identity	73.23
Mean single sequence MFE	-16.18
Consensus MFE	-6.44
Energy contribution	-6.04
Covariance contribution	-0.40
Combinations/Pair	1.18
Mean z-score	-1.72
Structure conservation index	0.40
SVM decision value	0.01
SVM RNA-class probability	0.538661
Prediction	RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 9441589 94 - 22224390
AAAAAUUCGCGCAAAUUCCAAUGUCGAGUUUUGUUUGCUUUUAUUUCAUAUGACCGAUCAUAAAUAUGUUUAUUGUUUAUAAUCGUAAACAAAU
.((((((((.(((........)))))))))))((((((.......((....))..(((.(((((((.......))))))).))))))))).... ( -17.50)
>DroSec_CAF1 23327 94 - 1
GAAAAUUCGCGCAAAUUCCAUUGUCGAGUUUGGGUCGGUUUUAUUCCAUAUCAGCGAUCAUAAAUAUGUUUACUGUUUAUAAUCGUAAACAAAU
.(((((..((.(((((((.......))))))).))..)))))...........(((((.(((((((.(....)))))))).)))))........ ( -19.60)
>DroEre_CAF1 23495 73 - 1
---------------------UGUCGACUUUUGGUCGGUUUUAUUUCAUAUUAUCGAUCAUAAAUGUGCUUAUUGUUUAUAAUCGUAAACAAAU
---------------------..........((((((((..(((...)))..))))))))............((((((((....)))))))).. ( -13.40)
>DroYak_CAF1 24204 93 - 1
-AAAAUUCGCACAAAUUCCAUUGUCGAGUUUUGUGCGGUUUUAUUCCAUAUGACCGAUCAUAAAUAUGUUUAUUGUUUAUAAUCGUAAACAAAU
-.(((..(((((((((((.......))).))))))))..)))......(((((....)))))..........((((((((....)))))))).. ( -18.80)
>DroAna_CAF1 24221 71 - 1
-CAAAUUCGCACACAUUC----------------------UUUUUCUAUAUGGCCGGUCAUAAAUGUGUUUAUUGUUUAUAAUCGUAAACAAAU
-.........(((((((.----------------------........(((((....))))))))))))...((((((((....)))))))).. ( -11.60)
>consensus
_AAAAUUCGCACAAAUUCCA_UGUCGAGUUUUGGUCGGUUUUAUUCCAUAUGACCGAUCAUAAAUAUGUUUAUUGUUUAUAAUCGUAAACAAAU
......................................................((((.(((((((.......))))))).))))......... ( -6.44 =  -6.04 +  -0.40)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:01:34 2006