Locus 3524

Sequence ID X_DroMel_CAF1
Location 9,441,277 – 9,441,393
Length 116
Max. P 0.622791
window5770

overview

Window 0

Location 9,441,277 – 9,441,393
Length 116
Sequences 5
Columns 120
Reading direction forward
Mean pairwise identity 89.37
Mean single sequence MFE -25.72
Consensus MFE -18.70
Energy contribution -20.42
Covariance contribution 1.72
Combinations/Pair 1.10
Mean z-score -1.81
Structure conservation index 0.73
SVM decision value 0.18
SVM RNA-class probability 0.622791
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 9441277 116 + 22224390
AAACA----AACAAAACGAAUGCAAUUCGAUCUCGAACUGGAUCUUGUUGUCUUCCGCUAUUCAAUUGCCGUAAAACGCAAUUCAAAUGCGAUUGCAUAAGAAUCAGAUGGAAAUCGAGA
.....----................((((((.((.(.((((.((((((.((..((.((.....((((((........)))))).....))))..)))))))).)))).).)).)))))). ( -26.90)
>DroSec_CAF1 22996 116 + 1
AAACA----AACAAAACGAAUGCAAUUCGAUCUCGAACUGGAUCUUGUUGUCUUCCGCUAUUCAAUUGCCGUAAAACGCAAUUCAAAUGCGAUUGCAUAAGAAUCAAAUGGAAAUCGAGA
.....----................((((((.((.(..(((.((((((.((..((.((.....((((((........)))))).....))))..)))))))).)))..).)).)))))). ( -23.30)
>DroEre_CAF1 23132 120 + 1
AAACAAACAAACAAAACGAAUGCAAUUCGAUCUCGAACUGGAUCUUGUUGUCUUCCGCUAUUCAAUUGCCGUAAAACGCAAUUCAAAUGGGAUUGCAUAAGAAUCGGAUGGAAAUCGAGA
.........................((((((.((.(.((((.((((((.((..(((.(.....((((((........)))))).....))))..)))))))).)))).).)).)))))). ( -27.00)
>DroYak_CAF1 23849 116 + 1
AAACA----AACAAAACGAAUGCAAUUCGAUCUCGAACUGGAUCUUGUUGUCUUCCGCUAUUCAAUUGCCGUAAAACGCAAUUCAAAUGCGAUUGCAUAAGAAUCGGAUGGAAAUCGAGA
.....----................((((((.((.(.((((.((((((.((..((.((.....((((((........)))))).....))))..)))))))).)))).).)).)))))). ( -26.20)
>DroAna_CAF1 23874 105 + 1
ACAGA----AACAA----AAUGCAAUUCGAUCUCGAACUGGAUCUCGUUGUCUUCCGCUUUUCAAUUGCCGUAAAACGCAAUUUCGAACGGGUUGCAUAAGAUCC-------AAUCCAGA
.....----.....----.......((((....)))).(((((((...(((..((((.(((..((((((........))))))..)))))))..)))..))))))-------)....... ( -25.20)
>consensus
AAACA____AACAAAACGAAUGCAAUUCGAUCUCGAACUGGAUCUUGUUGUCUUCCGCUAUUCAAUUGCCGUAAAACGCAAUUCAAAUGCGAUUGCAUAAGAAUCAGAUGGAAAUCGAGA
.........................((((((.((.(.((((.((((((.((..((.((.....((((((........)))))).....))))..)))))))).)))).).)).)))))). (-18.70 = -20.42 +   1.72)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:01:33 2006