Locus 3523

Sequence ID X_DroMel_CAF1
Location 9,441,094 – 9,441,189
Length 95
Max. P 0.984475
window5769

overview

Window 9

Location 9,441,094 – 9,441,189
Length 95
Sequences 4
Columns 96
Reading direction forward
Mean pairwise identity 76.64
Mean single sequence MFE -20.20
Consensus MFE -11.35
Energy contribution -13.22
Covariance contribution 1.87
Combinations/Pair 1.00
Mean z-score -2.57
Structure conservation index 0.56
SVM decision value 1.98
SVM RNA-class probability 0.984475
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 9441094 95 + 22224390
GCUGGCACUUUGAACCGAAGUAGAGGGCGCACUUCUACACUUCUACACCCCCUAGAUUGGUUCAUUCAUUCAUUUGCCAACAAAACACUGUACAC-
(.(((((...((((((((.(((((((.....)))))))...((((.......))))))))))))..........))))).)..............- ( -24.42)
>DroSec_CAF1 22822 86 + 1
GCUGGCACUUUGAACCGAAGUAGAGGGCGCACUUCUACAC---------CCCUAGAUUGGUUCAUUCAUUCAUUCGCCAACAAAACACUGUGCAC-
((((((....((((((((..(((.(((.(........).)---------)))))..))))))))...........))))(((......)))))..- ( -21.76)
>DroEre_CAF1 22971 73 + 1
GCUGGCACUUUGAACCGAA-----------------------CUACACCCCCUAGAUUGGUUCAUUCAUUCAUUUGCCAACAAAACGCAGUGCACU
....(((((.((((((((.-----------------------(((.......))).))))))))........((((....))))....)))))... ( -17.30)
>DroYak_CAF1 23673 73 + 1
GCUGGCACUUUGAACCGAA-----------------------CUACACCCCCUAGAUUGGUUCAUUCAUUCAUUUGCCAACAAAACACAGUGCACU
....(((((.((((((((.-----------------------(((.......))).))))))))........((((....))))....)))))... ( -17.30)
>consensus
GCUGGCACUUUGAACCGAA_______________________CUACACCCCCUAGAUUGGUUCAUUCAUUCAUUUGCCAACAAAACACAGUGCAC_
(.(((((...((((((((.(((((((.....)))))))....(((.......))).))))))))..........))))).)............... (-11.35 = -13.22 +   1.87)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:01:32 2006