Locus 3522

Sequence ID X_DroMel_CAF1
Location 9,439,514 – 9,439,621
Length 107
Max. P 0.521751
window5768

overview

Window 8

Location 9,439,514 – 9,439,621
Length 107
Sequences 3
Columns 107
Reading direction forward
Mean pairwise identity 85.36
Mean single sequence MFE -34.70
Consensus MFE -25.11
Energy contribution -24.45
Covariance contribution -0.66
Combinations/Pair 1.13
Mean z-score -1.82
Structure conservation index 0.72
SVM decision value -0.02
SVM RNA-class probability 0.521751
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 9439514 107 + 22224390
AUUAGAACAGCUGACCGCAUCCGGAUUUCAAGGGUCCACGAAGCGGCGGUCAAGUCUAUGGAAAAAGAAACGUCGUAGUGGCCAAGGCCAAAACCGGUACAGUUGCC
.......((((((((((.....(((((.....))))).....((((((......(((.(....).)))..))))))..((((....))))....)))).)))))).. ( -32.80)
>DroSec_CAF1 21096 107 + 1
AUGAGAACAGCUGACCGCAUCCGGAUUUCAAGGGCCCCCGAAGCGGCGCUCAAGUCUAUGGAAAAAGAAUCGUUGUAGUGGCCAAGGCCAAAACCGGUACAGUUGCC
.......((((((((((..(((((((((..((.(((........))).)).))))))..))).........(((....((((....)))).))))))).)))))).. ( -33.20)
>DroYak_CAF1 22024 101 + 1
AUUAGAACAGCUGACCGCAUCCGGAUUUCAAGGGCUCU----ACGGCGGUCAAGAAUACAG--AAUGUAACGUCGUAGUGGCCAAGGUCAGAAGCGGUACAGUUGCC
.......(((((((((((.((..(((((....((((((----((((((..((.........--..))...)))))))).)))).))))).)).))))).)))))).. ( -38.10)
>consensus
AUUAGAACAGCUGACCGCAUCCGGAUUUCAAGGGCCCACGAAGCGGCGGUCAAGUCUAUGGAAAAAGAAACGUCGUAGUGGCCAAGGCCAAAACCGGUACAGUUGCC
.......((((((((((..(((.........)))........((((((......................))))))..((((....))))....)))).)))))).. (-25.11 = -24.45 +  -0.66)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:01:31 2006