Locus 3512

Sequence ID X_DroMel_CAF1
Location 9,425,995 – 9,426,086
Length 91
Max. P 0.500000
window5748

overview

Window 8

Location 9,425,995 – 9,426,086
Length 91
Sequences 4
Columns 95
Reading direction forward
Mean pairwise identity 83.51
Mean single sequence MFE -25.27
Consensus MFE -15.16
Energy contribution -16.23
Covariance contribution 1.06
Combinations/Pair 1.12
Mean z-score -1.81
Structure conservation index 0.60
SVM decision value -0.07
SVM RNA-class probability 0.500000
Prediction OTHER

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 9425995 91 + 22224390
CUCCAUUCUGCACGAAAGCGAAAGGAGUUCCUGAUUAGGGGGAUUCAUACACAUGGCAGUGGUAUCUACAUAC----GUACUUAUGGUGGAACUA
.((((((((((.(....)(....)((((((((......)))))))).........)))).(((((........----)))))...)))))).... ( -22.40)
>DroSec_CAF1 7800 95 + 1
CUCCAUUCUGCACGAAAGCGAAAGGAGUUCCUGAUUAGGGGGAUUCAUACACACGGCAGUAGUAUGUACAUACAUAUGUACUUAUGGUGGAACUA
.((((((((((.((....(....)((((((((......)))))))).......))))))..(((.((((((....)))))).))))))))).... ( -28.70)
>DroSim_CAF1 8055 95 + 1
CUCCAUUCUGCACGAAAGCGAAAGGAGUUCCUGAUCAGGGGAAUUCAUACACACGGCAGUAGUAUGUACAUACAUAUGUACUUAUGGUGGAACUA
.((((((((((.((....(....)((((((((......)))))))).......))))))..(((.((((((....)))))).))))))))).... ( -29.20)
>DroYak_CAF1 8361 82 + 1
CUCCAUUCUGCACGAAAGCGAAAGGAGUUCCUGAUUAGGGGAAUGCACACAUA-----------UGUACUUUAGUAUCU--UUAUGGUGUUACUA
((((.(((.((......))))).))))(((((.....)))))..((((.((((-----------.((((....))))..--.))))))))..... ( -20.80)
>consensus
CUCCAUUCUGCACGAAAGCGAAAGGAGUUCCUGAUUAGGGGAAUUCAUACACACGGCAGUAGUAUGUACAUACAUAUGUACUUAUGGUGGAACUA
((((.(((.((......))))).))))(((((......)))))......(((........((((((((......))))))))....)))...... (-15.16 = -16.23 +   1.06)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:01:13 2006