Locus 351

Sequence ID X_DroMel_CAF1
Location 1,082,940 – 1,083,060
Length 120
Max. P 0.804598
window532

overview

Window 2

Location 1,082,940 – 1,083,060
Length 120
Sequences 6
Columns 120
Reading direction forward
Mean pairwise identity 80.83
Mean single sequence MFE -48.48
Consensus MFE -30.94
Energy contribution -31.33
Covariance contribution 0.39
Combinations/Pair 1.31
Mean z-score -2.07
Structure conservation index 0.64
SVM decision value 0.63
SVM RNA-class probability 0.804598
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 1082940 120 + 22224390
CGCAGGUCAUCAGCGUAAUGAUGACCAAGGAGCAGCUCUGGCAGCGCUGGGCGCUCGGCUUCCUCUGGCGGCGAUCGCAGCAUCUGGUCAGCAGGUAGAGCAGCAGGCCCAGUAGGGAGC
....((((((((......))))))))...((((.((.(..((...))..))))))).(((((((((((.(.(....((.(((((((.....)))))...)).)).).))))).))))))) ( -50.30)
>DroVir_CAF1 17030 120 + 1
CACAGGUCAUCAGCGUUAUGAUGACCAGCGAACAGCUCUGGCAGCGCUGGGUGCUCGGCUUGCGCUGCUUGCGAUCGCAGCAGCGCGUCAACAGAUACAGGAGCAGGCCGAGCAGCGAGA
....((((((((......))))))))((((....((....))..)))).(.((((((((((((((((((.((....))))))))(..((....))..)....)))))))))))).).... ( -60.60)
>DroGri_CAF1 14396 120 + 1
CACAGGUCAUCAACGUUAUAAUGACCAGUGAGCAGCUCUGGCAACGCUGGGCGCUCGGCUUGCGCUGCUUGCGAUCGCAGCAACGCGUCAACAAAUACAGUAGCAGGCCAAGCAGCGAGA
(((.((((((..........)))))).))).((.((.(..((...))..)))(((.((((((((((((........))))).((..((........)).)).))))))).))).)).... ( -44.50)
>DroWil_CAF1 13751 120 + 1
CACAGGUCAUCAGGGUUAUGAUGACCAAGGAGCAACUCUGACACCUUUGGGCACUUGGUUUGCGUUGUUUUCGAUCGCAGCAUCUUGUCAGUAGAUAUAGUAGCAGACCCAAUAAUGAUA
....((((((((......))))))))((((.(((....)).).)))).........((((((((((((........)))))((..((((....))))..)).)))))))........... ( -32.20)
>DroMoj_CAF1 24125 120 + 1
CACAGGUCAUCAGCGUUAUGAUGACCAGCGAACAGCUCUGGCAGCGCUGAGCGCUCGGCUUGCGCUGCUUGCGAUCGCAGCAACGCGUCAGUAGAUACAGCAGCAAGCCGAGCAACGAGA
....((((((((......))))))))..((....((((.(((...)))))))(((((((((((((((.((((...(((......)))...))))...)))).)))))))))))..))... ( -57.20)
>DroAna_CAF1 15328 120 + 1
CACAGGUCAUCAGGGUGAUGAUGACCAACGAACAGCUCUGGCACCUCUGGGCGCUGGGCUUCCUCUGGCGGCGGUCACAGCAGCGGGUCAGGAGGUAGAGGAGCAGUCCCAGGAGCGAAA
....((((((((......))))))))..((....(((((...((((((.(((((((((((.((......)).)))).)))).....))).))))))...)))))..((....)).))... ( -46.10)
>consensus
CACAGGUCAUCAGCGUUAUGAUGACCAACGAACAGCUCUGGCAGCGCUGGGCGCUCGGCUUGCGCUGCUUGCGAUCGCAGCAACGCGUCAGCAGAUACAGCAGCAGGCCCAGCAGCGAGA
....((((((((......))))))))........((((.((.....))))))(((.((((((((((((........))))).....(((....)))......))))))).)))....... (-30.94 = -31.33 +   0.39)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:42:23 2006