| Sequence ID | X_DroMel_CAF1 |
|---|---|
| Location | 9,417,247 – 9,417,358 |
| Length | 111 |
| Max. P | 0.955698 |
| Location | 9,417,247 – 9,417,358 |
|---|---|
| Length | 111 |
| Sequences | 5 |
| Columns | 118 |
| Reading direction | forward |
| Mean pairwise identity | 84.72 |
| Mean single sequence MFE | -27.98 |
| Consensus MFE | -18.45 |
| Energy contribution | -19.41 |
| Covariance contribution | 0.96 |
| Combinations/Pair | 1.11 |
| Mean z-score | -2.92 |
| Structure conservation index | 0.66 |
| SVM decision value | 1.46 |
| SVM RNA-class probability | 0.955698 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 9417247 111 + 22224390 GUUCGAUAAACAAAUGGCAUACCAUUUGCUUUGAGGAACCAUAGAUCUGAGGUUGUGAGGACU----AACAACAACAGAUCGGAGAUCCUUAAAUUCAAAUUCAGCAAUAUUAAA--- (((.(((...(((((((....))))))).((((((((.((...((((((..(((((.......----.)))))..)))))).).).)))))))).....))).))).........--- ( -31.50) >DroSec_CAF1 2559 108 + 1 GUUCGAUAACCAAAUGGCAUACCAUUUGCUCUGAGGAACUAUAGAUCUGAGGGUCUAAUGACU----AAC---AACAGAUCGGAGAUCCUUAAAUUCAAAUUCAGCAAUAUUGAA--- .(((((((..(((((((....)))))))...((((((.((...((((((..((((....))))----...---..))))))..)).))))))................)))))))--- ( -31.30) >DroSim_CAF1 2265 108 + 1 GUUCGAUAACCAAAUGGCAUACCAUUUGCUCUGAGGAUUUAUAGAUCUGAGGGUCUGAUGACU----AAC---AACAGAUCGGAGAUCCUUAAAUUCAAAUUCAGCAAUAUUGAA--- .(((((((..(((((((....)))))))...(((((((((...((((((..((((....))))----...---..))))))..)))))))))................)))))))--- ( -33.30) >DroEre_CAF1 2476 111 + 1 GUUCGAUAAUCAAAUGGCAUGUCAUUUGCUCUGAGGAACUAUAGAUCUGAGGGUG---ACACAUGCAUAC---AACAGAUCGGAGAUCC-UAAAUUCAAAUUCAGCAAUAUUAAAUUA (((.(((...(((((((....))))))).....((((.((...((((((..((((---.(....)))).)---..))))))..)).)))-)........))).)))............ ( -22.10) >DroYak_CAF1 2512 108 + 1 GUUUAAUAACCAAAUGGCAUAGCAUUCGCUCUGAGGAACUAUAGAUCUGAGGGUA---ACACA----UAC---AACAGAUCGGAGAUCCUUAAAUUUAAAUUCAGCAUUAUGAAAUUA ............(((..((((((....))..((((((.((...((((((...(((---.....----)))---..))))))..)).))))))................))))..))). ( -21.70) >consensus GUUCGAUAACCAAAUGGCAUACCAUUUGCUCUGAGGAACUAUAGAUCUGAGGGUCU_AAGACU____AAC___AACAGAUCGGAGAUCCUUAAAUUCAAAUUCAGCAAUAUUAAA___ .(((((((..(((((((....)))))))...((((((.((...((((((..........................))))))..)).))))))................)))))))... (-18.45 = -19.41 + 0.96)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:01:07 2006