Locus 3507

Sequence ID X_DroMel_CAF1
Location 9,416,876 – 9,416,979
Length 103
Max. P 0.668111
window5741

overview

Window 1

Location 9,416,876 – 9,416,979
Length 103
Sequences 5
Columns 112
Reading direction reverse
Mean pairwise identity 83.71
Mean single sequence MFE -26.70
Consensus MFE -15.50
Energy contribution -17.14
Covariance contribution 1.64
Combinations/Pair 1.05
Mean z-score -2.24
Structure conservation index 0.58
SVM decision value 0.28
SVM RNA-class probability 0.668111
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 9416876 103 - 22224390
AGUGCUCUUUCGAAAUGUUUGUGGUUUCGAGAUGGCAGACAGGAGAUGU---UUGUCUGUAGUUUUUACAUUUUGAAAGAAA------CUAACCCUAAGCUAAACGAUCUAA
(((..(((((((((((((..........(((((.(((((((((.....)---)))))))).))))).))))))))))))).)------))...................... ( -26.80)
>DroSec_CAF1 2208 106 - 1
AGUGCUCUUUCGAAAUGAUUAUGGUUUCGAGAGGGCAAACAGGAGAACUCCCUCCUCUGUAGUUUUUACAUUUUGAAAGAAA------CUAACCCUAAGCUAAACGAUCUAA
..((((((((((((((.......))))))))))))))...(((((......)))))...((((((((..........)))))------)))..................... ( -28.10)
>DroSim_CAF1 1914 106 - 1
AGUGCUCUUUCGAAAUGAUUAUGGUUUCGAGAGGGCAAACAGGAGGACUCCCUCCUCUGUAGUUUUUACAUUUUAAAAGAAA------CUAACCCUAAGCUAAACGAUCUAA
..((((((((((((((.......))))))))))))))...((((((....))))))...((((((((..........)))))------)))..................... ( -31.20)
>DroEre_CAF1 2129 90 - 1
ACUGCUCUUUUGAAACG------------AGAGGGCAAACAGGAGAACU----GCUCUGUAGUUUUUACAUUUGGAAGGAAG------CUAACCCUAAGCUAAACGAUCUAA
..((((((((((...))------------)))))))).....(((((((----((...)))))))))....(((((.(..((------((.......))))...)..))))) ( -21.90)
>DroYak_CAF1 2146 108 - 1
ACGGCUCUUUCGAAACGAUUGUGCUUUCGAGAGGGCAAACAGGAGAACU----CCUCUGUAGUUUUUACAUUUGGAAAGAAACUAAAACUAACCCUAAGCUAAACGAUCUAA
.((((((((((((((((....)).))))))))))))..((((..(....----)..))))((((((....(((....)))....))))))..............))...... ( -25.50)
>consensus
AGUGCUCUUUCGAAAUGAUUAUGGUUUCGAGAGGGCAAACAGGAGAACU___UCCUCUGUAGUUUUUACAUUUUGAAAGAAA______CUAACCCUAAGCUAAACGAUCUAA
...(((((((((((((.......)))))))))))))((((.((((.........))))...))))............................................... (-15.50 = -17.14 +   1.64)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:01:06 2006