| Sequence ID | X_DroMel_CAF1 |
|---|---|
| Location | 9,414,674 – 9,414,776 |
| Length | 102 |
| Max. P | 0.665194 |
| Location | 9,414,674 – 9,414,776 |
|---|---|
| Length | 102 |
| Sequences | 6 |
| Columns | 102 |
| Reading direction | reverse |
| Mean pairwise identity | 78.87 |
| Mean single sequence MFE | -36.67 |
| Consensus MFE | -22.43 |
| Energy contribution | -21.27 |
| Covariance contribution | -1.16 |
| Combinations/Pair | 1.38 |
| Mean z-score | -1.60 |
| Structure conservation index | 0.61 |
| SVM decision value | 0.28 |
| SVM RNA-class probability | 0.665194 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 9414674 102 - 22224390 CACAUCCUGCAGAUGUCCAAUGGGCAUGGUGGGAACAGGAUACGGUCCGAAUGGCUGUGUCAAUGGCACGACCACAAACUGCAAGGAAAAUCCCUGCCUGGU ....((((((((((((((...))))))(((.(...((.(((((((((.....)))))))))..))...).))).....)))).)))).....((.....)). ( -35.00) >DroPse_CAF1 1 100 - 1 UGUCGUCUGCAGCUGUCCGGCCGGAAUGGUCGGCACUGGCUAUGGCUCCAAUGGCUGUGUCAAUGGCACGGCCAACAACUGCAAAUCUAAUCCCUGUCUG-- .......(((((.(((((((((.....))))))....(((....)))....(((((((((.....)))))))))))).))))).................-- ( -34.50) >DroSec_CAF1 1 100 - 1 CACAUCCUGCAGAUGUCCAAUGGGCAUGGUGGGAACGGGAUACGGCCCAAAUGGCUGUGUCAAUGGCACGACCACAAACUGUCUGGGAAAUCCCUGCCUG-- ....(((..(..((((((...)))))).)..)))....(((((((((.....)))))))))...((((.(((........))).(((....)))))))..-- ( -39.10) >DroEre_CAF1 1 102 - 1 AAUAACCUGCAGAUGUCCCACGGGCAUGGUGGGCACAGGAUAUGCUCCGAACGGCUGUAUCAAUGGCACGACCACGAAUUGCGUGGGAAAUCCCUGCCUGGU ....(((.((((...(((((((..(.((((.(((....((((((((......))).)))))....)).).)))).).....))))))).....))))..))) ( -36.10) >DroYak_CAF1 1 102 - 1 CACAUCCUGCAGAUGUCCAAUGGGCAUGGUGGGAUCGGGAUACGGUCCGAAUGGCUGUGUCAAUGGCACGACCACGAAUUGCAUGGGAAAUCCCUGCCUGGU ....(((..(..((((((...)))))).)..)))(((.(((((((((.....)))))))))..(((.....))))))...(((.(((....))))))..... ( -36.60) >DroPer_CAF1 1 100 - 1 UGUCGUCUGCAGUUGUCCGGCCGGAAUGGUCGGCACUGGCUAUGGCUCCAAUGGCUGUGUCAAUGGCACGGCCAACAACUGCAAAUCUAAUCCCUGUCUG-- .......(((((((((((((((.....))))))....(((....)))....(((((((((.....)))))))))))))))))).................-- ( -38.70) >consensus CACAUCCUGCAGAUGUCCAACGGGCAUGGUGGGAACAGGAUACGGCCCGAAUGGCUGUGUCAAUGGCACGACCACAAACUGCAAGGGAAAUCCCUGCCUG__ ....((.(((((.((((.....))))((((.(...(..(((((((((.....)))))))))...)...).))))....))))).))................ (-22.43 = -21.27 + -1.16)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:01:04 2006