| Sequence ID | X_DroMel_CAF1 |
|---|---|
| Location | 9,399,710 – 9,399,819 |
| Length | 109 |
| Max. P | 0.719959 |
| Location | 9,399,710 – 9,399,819 |
|---|---|
| Length | 109 |
| Sequences | 6 |
| Columns | 118 |
| Reading direction | reverse |
| Mean pairwise identity | 61.10 |
| Mean single sequence MFE | -31.88 |
| Consensus MFE | -8.08 |
| Energy contribution | -10.53 |
| Covariance contribution | 2.45 |
| Combinations/Pair | 1.38 |
| Mean z-score | -2.32 |
| Structure conservation index | 0.25 |
| SVM decision value | 0.40 |
| SVM RNA-class probability | 0.719959 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 9399710 109 - 22224390 GUUGGCUGCGUUGCG-CAGGCCA-AUCGAUAGCUGCGAUUAACGGCCCCGCUCACUAUCGAUUGCGCUUGAGUGGCUAGAAAAUAGCGAAAA-------AAAUUAUUUUACUACUCGA ((((.(((.((..(.-(((((((-((((((((..(((...........)))...)))))))))).))))).)..)))))....)))).....-------................... ( -34.50) >DroSec_CAF1 13663 109 - 1 GUUGGCUGCGUUGCG-CAGGCCA-AUCGAUAGCUGUGAUUAACGUCGCCGCUCACUAUCGAUUGCGCGAGAGUGGCUAGAAAAUAGCCAACA-------AAAAAAUUUGAAUACUCGA .....(((((...))-)))((((-(((((((((.(((((....))))).)))....)))))))).))..(((((((((.....)))))..((-------((....))))...)))).. ( -37.40) >DroEre_CAF1 1023 104 - 1 GUUGGUUGCGCUGCG-CAGGCCA-AUCGAUAGGUGCGAUUAACGGCGUCGCUCACUAUCGAAUGCGCGUGAGUGGCUAUAAAAUAGCCAACU-------AAAUUAUGUUACUA----- ((((((((.((..(.-((.((((-.((((((((.(((((.......))))).).))))))).)).)).)).)..)).......)))))))).-------..............----- ( -37.40) >DroWil_CAF1 1996 96 - 1 GUUGGCUGUGGUUCA-GAGUUGAAACCGAUA----CACUUAUCGAUAUGGCCGACUAUCGAUAUCA--------------AAAUAAUGAACUGCUGUCAACACUAU-CAAGCAU--GA ((((((.(..(((((-(.((((....)))).----)...((((((((.(.....)))))))))...--------------......)))))..).)))))).....-.......--.. ( -26.70) >DroYak_CAF1 17699 104 - 1 GUUGGCUGCGCUGCG-CAGGCCA-AUCGAUAGGUGCGAUUAACGGCGUCGCUCACUAUCGAUUG----UGGGUGGCUAUAAAAUAGCCAACU-------AAAUUAU-UAACUAUUCGA ((((((((.((..(.-((...((-(((((((((.(((((.......))))).).))))))))))----)).)..)).......)))))))).-------.......-........... ( -37.50) >DroAna_CAF1 3205 85 - 1 GUUGGCUGCGAUGCGUCACGCUU-GCCG--GGUUGCGAUA--UU-------GCGCUAUCGAUAACAA-AAAACGGCUAAAAAGAAA------------------AGAUAAAUAAUA-- .((((((((((.(((...)))))-))..--.(((((((((--..-------....))))).))))..-.....)))))).......------------------............-- ( -17.80) >consensus GUUGGCUGCGCUGCG_CAGGCCA_AUCGAUAGCUGCGAUUAACGGCGUCGCUCACUAUCGAUUGCGC_UGAGUGGCUAGAAAAUAGCCAACU_______AAAUUAU_UAACUACUCGA ..((((((((((......)))...((((((((..(((...........)))...)))))))).........)))))))........................................ ( -8.08 = -10.53 + 2.45)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:01:01 2006