| Sequence ID | X_DroMel_CAF1 |
|---|---|
| Location | 1,080,632 – 1,080,733 |
| Length | 101 |
| Max. P | 0.644041 |
| Location | 1,080,632 – 1,080,733 |
|---|---|
| Length | 101 |
| Sequences | 6 |
| Columns | 106 |
| Reading direction | reverse |
| Mean pairwise identity | 72.02 |
| Mean single sequence MFE | -23.47 |
| Consensus MFE | -13.26 |
| Energy contribution | -13.82 |
| Covariance contribution | 0.56 |
| Combinations/Pair | 1.33 |
| Mean z-score | -1.43 |
| Structure conservation index | 0.56 |
| SVM decision value | 0.23 |
| SVM RNA-class probability | 0.644041 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 1080632 101 - 22224390 CAAAUGCCUCC-GAACUAACUAA--CAUUGAUC--UCUUUUAGCUCGGUGAGUUCUACGAAUCCAUUCGCUGGCCAGCCACCCUGGCCUUUCUCACUGUGCUCCUG ...........-...........--........--......(((.(((((((.....((((....))))..((((((.....))))))...))))))).))).... ( -25.80) >DroPse_CAF1 6550 95 - 1 CAUUCACAUUC-GGUCUGUCU--------G-U-CUUUUUGCAGAUGGGGGAACUCUACGAAUCGAUACGAUGGCCCGCCACCUUGGCCUUUCUCACCGUCCUGCUG ..........(-(((((((((--------(-(-......))))))))(((((........((((...))))((((.........)))).)))))))))........ ( -22.70) >DroSec_CAF1 2358 99 - 1 CAAAUGCCUCC-GAACUAACC----CAUUGAUC--UCUUUCAGCUCGGUGAGUUCUACGAAUCAAUUCGCUGGCCAGCCACCCUGGCCUUUCUCACUGUUCUCCUG ...........-((((.....----..((((..--....))))...((((((.....((((....))))..((((((.....))))))...))))))))))..... ( -24.00) >DroEre_CAF1 4932 104 - 1 UACUUGCCACG-GAACUG-CUAACCCACCAAUCUCUCUUGCAGCUCGGUGAGUUCUACGAAUCCAUACGCUGGCCCGCCACUCUGGCCUUUCUCACUGUGCUCCUG ..........(-((..((-(...................)))((.(((((((..........(((.....)))...(((.....)))....))))))).))))).. ( -21.81) >DroYak_CAF1 1365 105 - 1 UACAUACCUUG-CAACUAUCUGAGCCACCAAUCUCUCUUUCAGCUCGGCGAGUUCUACGAAUCGAUUCGCUGGCCAGCCACCCUGGCUUUCCUCACGGUGCUCCUG ...........-.........((((.(((.............((.(((((((((.........))))))))))).((((.....))))........)))))))... ( -27.40) >DroAna_CAF1 12899 103 - 1 AUUAUUCUUCCAGAAUUAACUU---CUCUAAUCCUCUUUAUAGUUGGGUGAAUUUUAUGAAUCGAUCCGGUGGCCAGCUACUCUGGCCUUCCUCACCAUCCUCCUA ...((((.....))))......---...............(((..(((((........((.....)).((.((((((.....))))))..))....)))))..))) ( -19.10) >consensus CAAAUGCCUCC_GAACUAACU____CACUAAUC__UCUUUCAGCUCGGUGAGUUCUACGAAUCGAUUCGCUGGCCAGCCACCCUGGCCUUUCUCACUGUGCUCCUG ........................................(((..(((((((.....((........))..((((((.....))))))...))))))).....))) (-13.26 = -13.82 + 0.56)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:42:22 2006