| Sequence ID | X_DroMel_CAF1 |
|---|---|
| Location | 9,393,535 – 9,393,644 |
| Length | 109 |
| Max. P | 0.778010 |
| Location | 9,393,535 – 9,393,644 |
|---|---|
| Length | 109 |
| Sequences | 4 |
| Columns | 120 |
| Reading direction | forward |
| Mean pairwise identity | 92.78 |
| Mean single sequence MFE | -31.32 |
| Consensus MFE | -28.79 |
| Energy contribution | -28.60 |
| Covariance contribution | -0.19 |
| Combinations/Pair | 1.03 |
| Mean z-score | -1.57 |
| Structure conservation index | 0.92 |
| SVM decision value | 0.55 |
| SVM RNA-class probability | 0.778010 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 9393535 109 + 22224390 --UGUGUGUGAGGCACACUUUCUUUC--UCUGCAAGUGUGUGCGUAUUUGUAU------UUGUAUUUGUGGCAACAGGCAACAAGCCAAGUUAAUUAGCAAAAA-GCAGAUAGCGUCACA --....(((((.((((((((.(....--...).))))))))((.(((((((.(------((((.....((....))(((.....)))..........)))))..-))))))))).))))) ( -31.20) >DroSec_CAF1 7475 117 + 1 --UGUGUGUGAGGCACACUUUCUUUCUCUCUGCAAGUGUGUGCGUAUUUGUAUUUGUAUUUGUAUUUGUGGCAACAGGCAACAAGCCAAGUUAAUUAGCAAAAA-GCAGAUAGCGUCACA --....(((((.((((((((.(.........).))))))))((.(((((((.(((((...........((....))(((.....)))..........)))))..-))))))))).))))) ( -30.70) >DroSim_CAF1 11669 113 + 1 UGUGUGUGUGGGGCACACUUUCUUUCUCUCUGCAAGUGUGUGCGUAUUUGUAU------UUGUAUUUGUGGCAACAGGCAACAAGCCAAGUUAAUUAGCAAAAA-GCAGAUAGCGUCACA ..(((((((.(.((((((((.(.........).)))))))).).(((((((.(------((((.....((....))(((.....)))..........)))))..-)))))))))).)))) ( -30.10) >DroYak_CAF1 11916 112 + 1 --UAUAGGUGAGGCACACUUUCUGUCUUUCUGCAAGUGUGUGCGUAUUUGUAU------UUGUAUUUGUGGCAACAGGCAACAAGCCAAGUUAAUUAGCAAAAAGGCAGAUAGCGUCACA --.....((((.((......(((((((((.(((...(((.(((.(((..(((.------...)))..)))))))))(((.....)))..........))).)))))))))..)).)))). ( -33.30) >consensus __UGUGUGUGAGGCACACUUUCUUUCUCUCUGCAAGUGUGUGCGUAUUUGUAU______UUGUAUUUGUGGCAACAGGCAACAAGCCAAGUUAAUUAGCAAAAA_GCAGAUAGCGUCACA .......((((.((((((((.(.........).))))))))((.(((((((........((((.....((....))(((.....)))..........))))....))))))))).)))). (-28.79 = -28.60 + -0.19)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:00:50 2006