| Sequence ID | X_DroMel_CAF1 |
|---|---|
| Location | 9,383,057 – 9,383,177 |
| Length | 120 |
| Max. P | 0.625466 |
| Location | 9,383,057 – 9,383,177 |
|---|---|
| Length | 120 |
| Sequences | 3 |
| Columns | 120 |
| Reading direction | forward |
| Mean pairwise identity | 87.83 |
| Mean single sequence MFE | -25.90 |
| Consensus MFE | -20.00 |
| Energy contribution | -20.33 |
| Covariance contribution | 0.33 |
| Combinations/Pair | 1.00 |
| Mean z-score | -2.09 |
| Structure conservation index | 0.77 |
| SVM decision value | 0.19 |
| SVM RNA-class probability | 0.625466 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 9383057 120 + 22224390 AUUAUUCAUGGAUUUUGGUUGGUAGAUUUUUCGGUGGUAGCGCCGGCAUUAUUGCAGUCAAUUGAAUUUGCAAAUUGCCAAUUAUAAUUACAGCAAACGGCAAACCAAAAUGAAAACAAC ...........(((((((((.((((.......((((....))))((((...(((((.((....))...)))))..))))........)))).((.....)).)))))))))......... ( -28.60) >DroSim_CAF1 331 105 + 1 AUUAUUGAUAG------------CGAUUUUUCGGUGGUAG--CCGGCAUUAUUGCAGUCAAUUGAAUUCGCAAAUUGCCAAUGAUAAUUACAGCAAACGGCA-ACCAAAAUGAAAACAAC ...........------------....((((((.((((.(--((((((...((((..((....))....))))..))))(((....))).........))).-))))...)))))).... ( -23.90) >DroYak_CAF1 497 105 + 1 AUUAUUCAUAG------------CGAUUUUUCGGUGGUAG--CCGGCAUUAUUGCAGUCAAUUGAAUUUGCAAAUUGCCAAUUAUAAUUACAGCAAACGGCA-ACCAAAAUGAAAACAAA ....(((((..------------(((....))).((((.(--((((((....))).((.(((((((((.((.....)).)))).)))))))......)))).-))))..)))))...... ( -25.20) >consensus AUUAUUCAUAG____________CGAUUUUUCGGUGGUAG__CCGGCAUUAUUGCAGUCAAUUGAAUUUGCAAAUUGCCAAUUAUAAUUACAGCAAACGGCA_ACCAAAAUGAAAACAAC ...........................((((((.((((......((((...(((((.((....))...)))))..)))).............((.....))..))))...)))))).... (-20.00 = -20.33 + 0.33)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:00:34 2006