Locus 3488

Sequence ID X_DroMel_CAF1
Location 9,375,663 – 9,375,763
Length 100
Max. P 0.759639
window5701

overview

Window 1

Location 9,375,663 – 9,375,763
Length 100
Sequences 3
Columns 102
Reading direction forward
Mean pairwise identity 72.24
Mean single sequence MFE -18.87
Consensus MFE -12.45
Energy contribution -12.57
Covariance contribution 0.11
Combinations/Pair 1.06
Mean z-score -1.35
Structure conservation index 0.66
SVM decision value 0.50
SVM RNA-class probability 0.759639
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 9375663 100 + 22224390
UGAAUUUUAAACGCCAUUCGC--CGCAGGUGCGAAUGUCGUGACUUGAAUUCCCGGCCUUUUCUUUUUCUUGACGCACAGCCAAAACUUUUCUUCGGUUUGU
.((((((...(((.(((((((--(....).))))))).))).....))))))..(((....((........))......))).(((((.......))))).. ( -20.60)
>DroPse_CAF1 183282 83 + 1
UGAAUUUUAAACGCCAUUCGCCCUCCAGGUGCAAAUGUCGUGACUUGAAUUUCC---UU-----UUUCC-----------ACAAACUUUUCCUUCCAUUUUU
.(((.((((((((.((((.((((....)).)).)))).)))...))))).))).---..-----.....-----------...................... ( -12.30)
>DroEre_CAF1 163304 94 + 1
UGAAUUUUAAACGCCAUUCGC--CCCAGGUGCGAAUGUCGUGACUUGAAUUCCCGGCUC-----UUUUCUUGCCGCGCAGCCGA-ACUUUUUCCCAAUUUUU
.((((((...(((.(((((((--(....).))))))).))).....)))))).((((((-----............).))))).-................. ( -23.70)
>consensus
UGAAUUUUAAACGCCAUUCGC__CCCAGGUGCGAAUGUCGUGACUUGAAUUCCCGGCUU_____UUUUCUUG_CGC_CAGCCAAAACUUUUCUUCAAUUUUU
.((((((...(((.(((((((.........))))))).))).....)))))).................................................. (-12.45 = -12.57 +   0.11)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:00:31 2006