| Sequence ID | X_DroMel_CAF1 |
|---|---|
| Location | 9,358,286 – 9,358,386 |
| Length | 100 |
| Max. P | 0.561008 |
| Location | 9,358,286 – 9,358,386 |
|---|---|
| Length | 100 |
| Sequences | 6 |
| Columns | 103 |
| Reading direction | reverse |
| Mean pairwise identity | 80.19 |
| Mean single sequence MFE | -28.77 |
| Consensus MFE | -13.99 |
| Energy contribution | -14.47 |
| Covariance contribution | 0.47 |
| Combinations/Pair | 1.12 |
| Mean z-score | -2.23 |
| Structure conservation index | 0.49 |
| SVM decision value | 0.05 |
| SVM RNA-class probability | 0.561008 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 9358286 100 - 22224390 AG-GCAAUUUUUCAACUUCCAAACAAGUCGACUUGUCAGUAUCUCUCAAGGACUCAUCUCUCGUCCUUGAGUCGAC--GAAUUAAGCCGGCGUCUUGUUGCCU .(-((.....(((.........(((((....)))))..((....(((((((((.........)))))))))...))--)))....)))((((......)))). ( -30.20) >DroSec_CAF1 136613 89 - 1 AA-GCAAUUUUUCAACUUCCAAACAAGUCGACUUGUCAG-----------GACUCAUCCCUGGUCCUUGAGUCCGC--GAAUUAAGCCGGCGUCUUGUUGCCU ..-((.................(((((....)))))..(-----------((((((.(....)....)))))))))--..........((((......)))). ( -22.60) >DroSim_CAF1 134543 100 - 1 AG-GCAAUUUUUUAACUUCCAAACAAGUCGACUUGUCAGGAUCGCUCAAGGACUCAUCCCUGGUCCUUGAGUCCUC--GAAUUAAGCCGGCGUCUUGUUGCCU .(-((............(((..(((((....)))))..)))..((((((((((.((....))))))))))))....--.......)))((((......)))). ( -35.40) >DroEre_CAF1 145936 100 - 1 AG-GCAAUUUUUUAACUUCCAAACAAGGCGACUUGUCAGGCUCGCUCAAGGACUCAUCUCUGAUCCCUGAGUCCUC--GAAUUAAGCCGGCGUCGUGUUGCCU ((-(((((.......(((......)))(((((..(((.((((...((.((((((((...........)))))))).--))....))))))))))))))))))) ( -33.60) >DroYak_CAF1 140824 100 - 1 GG-GCAAUUUUUUAGCUUCCAAACAGGACGACUUGUCAGGCUCUCGCAAGGACUCAUCUCUGGCCCUUGAGUCCUC--GAAUUAAGCCGGCGUCUUGUUGCCU ((-(((((......(((.....(((((....)))))..((((.(((..((((((((...........)))))))))--))....))))))).....))))))) ( -32.50) >DroAna_CAF1 155667 82 - 1 AGAGCAAU-UUUUAACUUCUAGACAGGACA-CU-------------------CUCAUCUCUGGGCCUUGAGUCCUUGGGAAUUAAGCUGGCGUCGUGUUGCUC .(((((((-.........(((((...((..-..-------------------.))...)))))(((((((.(((...))).))))...))).....))))))) ( -18.30) >consensus AG_GCAAUUUUUUAACUUCCAAACAAGUCGACUUGUCAGG_UC_CUCAAGGACUCAUCUCUGGUCCUUGAGUCCUC__GAAUUAAGCCGGCGUCUUGUUGCCU ...((.................(((((....)))))..............((((((...........))))))............)).((((......)))). (-13.99 = -14.47 + 0.47)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:00:30 2006