Locus 3486

Sequence ID X_DroMel_CAF1
Location 9,356,079 – 9,356,170
Length 91
Max. P 0.962417
window5699

overview

Window 9

Location 9,356,079 – 9,356,170
Length 91
Sequences 6
Columns 110
Reading direction reverse
Mean pairwise identity 90.69
Mean single sequence MFE -21.10
Consensus MFE -18.67
Energy contribution -18.87
Covariance contribution 0.20
Combinations/Pair 1.05
Mean z-score -2.08
Structure conservation index 0.89
SVM decision value 1.54
SVM RNA-class probability 0.962417
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 9356079 91 - 22224390
-------------AACAAUCAAAGUAAACAAAAGUUGGC------GCCGCAAAAAUCAAGCUCAGCUGUGGCAAACUUUUGCAGUUGAUACAAAAUUUUUGCUAACCGAA
-------------.....................((((.------...((((((((.....(((((((..(.......)..)))))))......))))))))...)))). ( -19.50)
>DroSec_CAF1 134482 89 - 1
-------------AACAAUCAAAGUAAACAAAAGUUGGC------GCCGCAAAAAUCAAGCUCAGCUGUGGCAAACUUUUGCAGUUGAUUUAAA-UU-UUGCUAACCGAA
-------------....................((((((------...((.........))(((((((..(.......)..)))))))......-..-..)))))).... ( -17.90)
>DroSim_CAF1 131960 90 - 1
-------------AACAAUCAAAGUAAACAAAAGUUGGC------GCCGCAAAAAUCAAGCUCAGCUGUGGCAAACUUUUGCAGUUGAUUUAAA-UUUUUGCUAACCGAA
-------------.....................((((.------...((((((((..((.(((((((..(.......)..))))))).))..)-)))))))...)))). ( -20.60)
>DroEre_CAF1 143853 90 - 1
-------------AACAAUCAAAGUAAACAAAAGUUGGC------GCCGCAAAAAUCAAGCUCAGCUGUGGCAAACUUUUGCAGUUGAUUUAAA-UUUUUGCUAACCGAA
-------------.....................((((.------...((((((((..((.(((((((..(.......)..))))))).))..)-)))))))...)))). ( -20.60)
>DroYak_CAF1 138635 90 - 1
-------------AACAAUCAAAGUAAACAAAAGUUGGC------GCCGCAAAAAUCAAGCUCAGCUGUGGCAAACUUUUGCAGUUGAUUUAAA-UUUUUGCUAACCGAA
-------------.....................((((.------...((((((((..((.(((((((..(.......)..))))))).))..)-)))))))...)))). ( -20.60)
>DroAna_CAF1 153271 109 - 1
GGAGAACGGCGAGAACAAUCAAAGUAAACAAAAGUUGUCGACCCAGCCGCAGAAAUCAAGCUCAGCUGUGGCAAAGUUUUGCAGUUGAUUUAAA-UUUUUGCUUACCGAA
((.....(((((......))...((..(((.....)))..))...)))((((((((..((.(((((((..(.......)..))))))).))..)-)))))))...))... ( -27.40)
>consensus
_____________AACAAUCAAAGUAAACAAAAGUUGGC______GCCGCAAAAAUCAAGCUCAGCUGUGGCAAACUUUUGCAGUUGAUUUAAA_UUUUUGCUAACCGAA
..................((................(((......)))(((((((......(((((((..(.......)..))))))).......))))))).....)). (-18.67 = -18.87 +   0.20)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:00:29 2006