| Sequence ID | X_DroMel_CAF1 |
|---|---|
| Location | 9,347,463 – 9,347,566 |
| Length | 103 |
| Max. P | 0.720994 |
| Location | 9,347,463 – 9,347,566 |
|---|---|
| Length | 103 |
| Sequences | 5 |
| Columns | 107 |
| Reading direction | forward |
| Mean pairwise identity | 89.75 |
| Mean single sequence MFE | -23.45 |
| Consensus MFE | -18.84 |
| Energy contribution | -19.48 |
| Covariance contribution | 0.64 |
| Combinations/Pair | 1.15 |
| Mean z-score | -1.57 |
| Structure conservation index | 0.80 |
| SVM decision value | 0.40 |
| SVM RNA-class probability | 0.720994 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 9347463 103 + 22224390 -GAUAUGAUAUAAGGUAAAUUAUUUGGGUGAGCCCAAGUGCAUGUGAGUAAUUGGAAAAGUUUGACACGUUAACACGACACA--AGUUGGUUAACUGAUGUUAUAU- -.(((((((((.........((((((((....))))))))...(((...((((.....))))...)))((((((.((((...--.))))))))))..)))))))))- ( -26.20) >DroSec_CAF1 127463 105 + 1 -GAUAUGAUAUAAGGUAAAUUAUUUGGGUGAGCCCAAGUGCAUGUGAGUAAUUGGAAAAGUUUGACAGGUUAACACGACACAAAAGUUAGUUAACUGAUGUUAUAG- -..((((((((.........((((((((....))))))))..(((.((...((....))..)).)))(((((((..(((......))).))))))).)))))))).- ( -22.70) >DroSim_CAF1 124913 105 + 1 -GAUAUGAUAUAAGGUAAAUUAUUUGGGUGAGCCCAAGUGCAUGUGAGUAAUUGGAAAAGUUUGACAGGUUAACACGACACAAAAGUUGGUUAACUGAUGUUAUAG- -..((((((((.........((((((((....))))))))..(((.((...((....))..)).)))(((((((.((((......))))))))))).)))))))).- ( -26.60) >DroEre_CAF1 136632 102 + 1 -UAUAUGAUAUAAGGUAAUUUAUUUGGGU-AGCC-CAGUGCAUGCGAGUAAUUGGAAAAGUUUGACAGGCUAACACGACACA--AGUGGGUUAACUGAUGCUAUGUU -.(((((.(((.((.((((((((((((.(-((((-..((.((.((..............)).)))).)))))......).))--))))))))).)).))).))))). ( -17.94) >DroYak_CAF1 130911 104 + 1 UUAUAUGAUAUAAGGCAAAUUAUUUGGGUGAGCC-AAGCGCAUGCGGGUAAUUGGAAAAGUUUGACGGGUUAACACGACACA--AGUGGGUUAACUGAUGUUUUGAU ..........((((((((((((((((.(((.((.-..)).))).)))))))))..............(((((((.(.((...--.)).))))))))..))))))).. ( -23.80) >consensus _GAUAUGAUAUAAGGUAAAUUAUUUGGGUGAGCCCAAGUGCAUGUGAGUAAUUGGAAAAGUUUGACAGGUUAACACGACACA__AGUUGGUUAACUGAUGUUAUAG_ ...((((((((......(((((((((.(((.((....)).))).)))))))))............((.((((((.((((......)))))))))))))))))))).. (-18.84 = -19.48 + 0.64)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:00:27 2006