| Sequence ID | X_DroMel_CAF1 |
|---|---|
| Location | 9,345,764 – 9,345,857 |
| Length | 93 |
| Max. P | 0.865788 |
| Location | 9,345,764 – 9,345,857 |
|---|---|
| Length | 93 |
| Sequences | 6 |
| Columns | 97 |
| Reading direction | forward |
| Mean pairwise identity | 76.31 |
| Mean single sequence MFE | -25.09 |
| Consensus MFE | -16.98 |
| Energy contribution | -17.12 |
| Covariance contribution | 0.14 |
| Combinations/Pair | 1.30 |
| Mean z-score | -1.48 |
| Structure conservation index | 0.68 |
| SVM decision value | 0.85 |
| SVM RNA-class probability | 0.865788 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 9345764 93 + 22224390 UACACCUCUG---AUGCAACAUCGAUUCCAUGGCAAGGCUAUGUUCGAGCGUGCAACAUGCAGCAUGUUGUGUUUUCAU-UCGAACAAUUGUUGCUG ..........---..((((((((((...((((((...))))))...(((.(..(((((((...)))))))..).)))..-)))).....)))))).. ( -26.30) >DroSec_CAF1 125784 93 + 1 UACACCUCUG---AUGCAACACCGAUUCCAUGGCACAGACAUGUUCGAGCGUGCAGCAUGCUGCAUGUUGUGUUUUCAU-UCGAACAAUUGUUGCUG ..........---..(((((((((......)))........(((((((((((((((....)))))))).(((....)))-)))))))..)))))).. ( -27.30) >DroSim_CAF1 123226 93 + 1 UACACCUCUG---AUGCAACAGCGAUUCCAUGGCACAGACAUGUUCGAGCGUGCAGCAUGCUGCAUGUUGUGUUUUCAU-UCGAACAAUUGUUGCUG ..........---..((((((((.((...)).)).......(((((((((((((((....)))))))).(((....)))-)))))))..)))))).. ( -28.80) >DroEre_CAF1 134878 87 + 1 UACGCCUGUG---ACGCAACAACAGUCCAAAGUC------AUGUUGCAGCGUGCAACGUGUUGCAUGUUGUGUUUUCAU-UCGAACAAUUGUUGCUG ..........---..(((((((............------.....(((((((((((....)))))))))))((((....-..))))..))))))).. ( -24.90) >DroYak_CAF1 129067 96 + 1 UACGCCUGUGAUAACGCUACGCCAUGCCAAAGUCAUAGACAUGUUUCAGGGUGCAACAUGUUGCAUGUUGUGUUUUCAU-UCGAACAAUUGUUGCUG ...(((((((((...((........))....)))))))...(((((.((((..(((((((...)))))))..))))...-..)))))......)).. ( -20.90) >DroAna_CAF1 139963 88 + 1 UACGCCACCC---UUGUUUUAUU--UUUGUUCGCG-ACGCGUGUU---GCAUGCAACAUGUUGCAUGUUGUGUUUUUAUUUUGGACAAUUGUUGCUG ...((.((..---((((((....--......((((-(((((((((---(....)))))))).....))))))..........))))))..)).)).. ( -22.35) >consensus UACACCUCUG___AUGCAACACCGAUUCCAUGGCA_AGACAUGUUCGAGCGUGCAACAUGCUGCAUGUUGUGUUUUCAU_UCGAACAAUUGUUGCUG ...............((((((..........................(((((((((....))))))))).(((((.......)))))..)))))).. (-16.98 = -17.12 + 0.14)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:00:26 2006