Locus 3481

Sequence ID X_DroMel_CAF1
Location 9,341,319 – 9,341,426
Length 107
Max. P 0.842165
window5692

overview

Window 2

Location 9,341,319 – 9,341,426
Length 107
Sequences 6
Columns 111
Reading direction forward
Mean pairwise identity 82.20
Mean single sequence MFE -32.77
Consensus MFE -18.30
Energy contribution -19.33
Covariance contribution 1.03
Combinations/Pair 1.12
Mean z-score -3.10
Structure conservation index 0.56
SVM decision value 0.75
SVM RNA-class probability 0.842165
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 9341319 107 + 22224390
UUAAAUUAAAUUGCUGUUGUUUUUUUUUUUAUU-UUGCUGGCG---AGAGCCGCGGUUUUCGAACUGCGACGGCGCGCCUUUGGAAACCAACUGAAAAAAAAAACACAGCA
...........((((((.(((((((((((((..-..((.(((.---...)))))((((((((((.((((....))))..))))))))))...))))))))))))))))))) ( -41.70)
>DroPse_CAF1 139585 97 + 1
UCGUGUCUGACUGUCGUUGCUUU----UCUCU-----CUGUCACGUCGAACUGCGA---ACGAACUGCGACGGCGCGCCUAUGAAAACCAACUGAGCAAC--AGCACCGAC
(((.(((((...((((((((..(----((((.-----(..((.....))...).))---..)))..))))))))((.....((.....)).....))..)--)).))))). ( -22.60)
>DroSec_CAF1 121579 103 + 1
UUAAAUUAAAUUGCUGUUGUUUU----UUUAUU-UUGCUGGCG---AGAGCCGCGGUUUUCGAACUGCGACGGCGCGCCUUUGGAAACCAACUGAAAAAAAAAACACAGCA
...........((((((.(((((----(((.((-((((.(((.---...)))))((((((((((.((((....))))..))))))))))....)))))))))))))))))) ( -37.10)
>DroSim_CAF1 118401 102 + 1
UUAAAUUAAAUUGCUGUUGUUU-----UUUAUU-UUGCUGGCG---AGAGCCGCGGUUUUCGAACUGCGACGGCGCGCCUUUGGAAACCAACUGAAAAAAAAAACACAGCA
...........((((((.((((-----(((.((-((((.(((.---...)))))((((((((((.((((....))))..))))))))))....)))).))))))))))))) ( -37.40)
>DroEre_CAF1 130369 101 + 1
UUAAAUUAAACUGCUGUUGUUUU----UUAAUU-UUGAUGGCG---AGAGCCGCGGUUUUCGAACUGCGACGGCGCGCCUUUGGAAACCAACUGAAAA--AAAACACAGAA
..........(((.((((.((((----(((...-..(.((((.---...)))))((((((((((.((((....))))..))))))))))...))))))--).))))))).. ( -31.10)
>DroYak_CAF1 124258 103 + 1
UUAAAUUAAACUGUUGUUGUUUC----UUAAUUUUUGUUGGCA---AGAGCCGCGGUUUUCGAACUGCGACGGCGCGCCUUUGGAAACCAACUGAAAA-AAAAACACAGAA
..........((((.(((.((((----.........((.(((.---...)))))((((((((((.((((....))))..))))))))))....)))).-...))))))).. ( -26.70)
>consensus
UUAAAUUAAACUGCUGUUGUUUU____UUUAUU_UUGCUGGCG___AGAGCCGCGGUUUUCGAACUGCGACGGCGCGCCUUUGGAAACCAACUGAAAAAAAAAACACAGAA
.............((((.((((.................(((.......)))..((((((((((.((((....))))..))))))))))............)))))))).. (-18.30 = -19.33 +   1.03)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:00:23 2006