Locus 3478

Sequence ID X_DroMel_CAF1
Location 9,332,011 – 9,332,105
Length 94
Max. P 0.572072
window5688

overview

Window 8

Location 9,332,011 – 9,332,105
Length 94
Sequences 3
Columns 94
Reading direction reverse
Mean pairwise identity 90.48
Mean single sequence MFE -22.17
Consensus MFE -18.44
Energy contribution -18.22
Covariance contribution -0.22
Combinations/Pair 1.05
Mean z-score -1.93
Structure conservation index 0.83
SVM decision value 0.08
SVM RNA-class probability 0.572072
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 9332011 94 - 22224390
CUGCGUACAUCCCCCUUCAUCGCCGCAUUCAUCUUUGCUCGUUGGUGGUGGUGGUGGUGUGCAUGUGUUUCAUAAAUUUUGUAUGCUCAUUAUU
....(((((((.((..(((((((((((........))).....)))))))).)).)))))))(((.((..((.......))...)).))).... ( -25.70)
>DroSec_CAF1 112517 85 - 1
CAGCGCACAUCCCCCUUCAUCGCCGCAUUCAUCUUUGCUC---------GGUGGUGGUGUGCAUGUGUUUCAUAAAUUUUGUAUGCUCAUUAUU
..((((((.........((((((((((........)))..---------)))))))))))))(((.((..((.......))...)).))).... ( -20.70)
>DroSim_CAF1 111594 85 - 1
CAUCGCACAUCCCCCUUCAUCGCCGCAUUCAUCUUUGCUU---------GGUGGUGGUGUGCAUGUGUUUCAUAAAUUUUGUAUGCUCAUUAUU
....((((((.......((((((((((........)))..---------)))))))))))))(((.((..((.......))...)).))).... ( -20.11)
>consensus
CAGCGCACAUCCCCCUUCAUCGCCGCAUUCAUCUUUGCUC_________GGUGGUGGUGUGCAUGUGUUUCAUAAAUUUUGUAUGCUCAUUAUU
....(((((((((((.........(((........)))...........)).)).)))))))(((.((..((.......))...)).))).... (-18.44 = -18.22 +  -0.22)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:00:19 2006