Locus 3477

Sequence ID X_DroMel_CAF1
Location 9,325,551 – 9,325,653
Length 102
Max. P 0.957878
window5687

overview

Window 7

Location 9,325,551 – 9,325,653
Length 102
Sequences 5
Columns 103
Reading direction forward
Mean pairwise identity 93.14
Mean single sequence MFE -23.48
Consensus MFE -21.78
Energy contribution -22.18
Covariance contribution 0.40
Combinations/Pair 1.00
Mean z-score -1.48
Structure conservation index 0.93
SVM decision value 1.48
SVM RNA-class probability 0.957878
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 9325551 102 + 22224390
AAAAGGUGGAACAAAAAAAUGGAGGCAAUGGAAAA-CCCAAGCCAAAAUGGGGAGGAGCAGUUACAGUUCCAGCCAGCUGCGCCCAAUUUCAAUUUCAACUUC
..(((.(((((....(((.(((..(((.(((....-((((........))))..(((((.......)))))..)))..)))..))).)))...))))).))). ( -25.20)
>DroSec_CAF1 106294 102 + 1
AAAAGGUGGAACAAAAAAAUAGAGGCAAUGGAAAA-CCCAAGCCAAAAUGGGGAGGAGCAGUUACAGUUCCAGCCAGCUGCGCCCAAUUUCAAUUUCAACUUC
..(((.(((((............(((..(((....-.))).)))....((((..(((((.......))))).((.....)).)))).......))))).))). ( -23.00)
>DroSim_CAF1 105335 102 + 1
AAAAGGUGGAACAAAAAAAUAGAGGCAAUGGAAAA-CCCAAGCCAAAAUGGGGAGGAGCAGUUACAGUUCCAGCCAGCUGCGCCCAAUUUCAAUUUCAACUUC
..(((.(((((............(((..(((....-.))).)))....((((..(((((.......))))).((.....)).)))).......))))).))). ( -23.00)
>DroEre_CAF1 115080 95 + 1
---AGGUGGAAAU-----AUAGAGGCAAUGGAAAAUGCCAAGCCAAAAUGGGGAGGAGCAGUUACAUUUCCAGCCAGCUGCGCCCAAUUUCAAUUUCAACUUC
---((((.(((((-----.....(((..(((......))).)))......(((....((((((............)))))).))).......))))).)))). ( -22.80)
>DroYak_CAF1 106580 99 + 1
AAAAGGUGGAAAAAA---AAAGAGGCAAUGGAAAA-GCCAAGCCAAAAUGGGGAGGAGCAGUUACAGUUCCAGCCAGCUGCGCCCAAUUUCAAUUUCAACUUC
...((((.((((...---.....(((..(((....-.))).)))....((((..(((((.......))))).((.....)).)))).......)))).)))). ( -23.40)
>consensus
AAAAGGUGGAACAAAAAAAUAGAGGCAAUGGAAAA_CCCAAGCCAAAAUGGGGAGGAGCAGUUACAGUUCCAGCCAGCUGCGCCCAAUUUCAAUUUCAACUUC
..(((.(((((............(((..(((......))).)))....((((..(((((.......))))).((.....)).)))).......))))).))). (-21.78 = -22.18 +   0.40)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:00:18 2006