Locus 3476

Sequence ID X_DroMel_CAF1
Location 9,323,352 – 9,323,442
Length 90
Max. P 0.993308
window5686

overview

Window 6

Location 9,323,352 – 9,323,442
Length 90
Sequences 6
Columns 102
Reading direction forward
Mean pairwise identity 70.52
Mean single sequence MFE -26.28
Consensus MFE -10.73
Energy contribution -12.37
Covariance contribution 1.64
Combinations/Pair 1.12
Mean z-score -2.60
Structure conservation index 0.41
SVM decision value 2.39
SVM RNA-class probability 0.993308
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 9323352 90 + 22224390
----CCCCGGAUCCCAAUU-CG-GAUCCCUUUGCCGCUCUGCUUUACGGCUUCGAUUUCAAUUUUCGGGCCCAAGG--GCAGAUUGGCAAAAAA----AUAA
----....((((((.....-.)-))))).(((((((.((((((((..((((.(((.........)))))))..)))--))))).)))))))...----.... ( -36.20)
>DroPse_CAF1 117587 76 + 1
-----CCCUGACC-CUGCCCCC-UGCCCCAUGCUACC--UGCUUUGUGGCUUCGAUUUCAAUUUUCGAGACUUUGGAAGCGGAUC-----------------
-----........-((((..((-.(((.((.((....--.))..)).)))(((((.........))))).....))..))))...----------------- ( -17.40)
>DroSec_CAF1 104162 90 + 1
----CCCC-GAUCCCAAUU-CC-GAUCCCUUUGCCGC--UGCUUUACGGCUUCGAUUUCAAUUUUCGGGCCCAAGG--GCAGAUUGGCAAAAA-AAAAAGAA
----....-((((......-..-))))..((((((.(--((((((..((((.(((.........)))))))..)))--))))...))))))..-........ ( -25.70)
>DroEre_CAF1 112898 88 + 1
----CCCC-GAUCCCAAUU-CCGGAUCCCUUUGCCGC--UGCUUUACGGCUUCGAUUUCAAUUUUCGGGCCCAAGG--GCAGAUUGGCAAAAAA----AAAA
----....-(((((.....-..)))))..((((((.(--((((((..((((.(((.........)))))))..)))--))))...))))))...----.... ( -28.70)
>DroYak_CAF1 104060 87 + 1
CCCCUCCC-GAUCCCAAUU-CC-GAUCCCUUUGCCGC--UGCUUUACGGCUUCGAUUUCAAUUUUCGGGCCCAAGG--GCAGAUUGGCAAUGAA--------
........-((((......-..-))))...(((((.(--((((((..((((.(((.........)))))))..)))--))))...)))))....-------- ( -24.70)
>DroAna_CAF1 115265 78 + 1
--------------AUAGC-CA-GAGCCUUUUCUCGC--UGCUUUACGGCUUCGAUUUCAAUUUUCGAGCCCAAGG--GCAGAUGGCCAAAAGG----UGGU
--------------...((-(.-..(((((((.((((--((((((..((((.(((.........)))))))..)))--)))).)))..))))))----)))) ( -25.00)
>consensus
____CCCC_GAUCCCAAUU_CC_GAUCCCUUUGCCGC__UGCUUUACGGCUUCGAUUUCAAUUUUCGGGCCCAAGG__GCAGAUUGGCAAAAAA____A_AA
.............................(((((((...(((.....((((.(((.........))))))).......)))...)))))))........... (-10.73 = -12.37 +   1.64)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:00:17 2006