Locus 3475

Sequence ID X_DroMel_CAF1
Location 9,322,890 – 9,323,009
Length 119
Max. P 0.500000
window5685

overview

Window 5

Location 9,322,890 – 9,323,009
Length 119
Sequences 3
Columns 119
Reading direction forward
Mean pairwise identity 85.15
Mean single sequence MFE -23.20
Consensus MFE -15.98
Energy contribution -15.77
Covariance contribution -0.21
Combinations/Pair 1.14
Mean z-score -1.86
Structure conservation index 0.69
SVM decision value -0.07
SVM RNA-class probability 0.500000
Prediction OTHER

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 9322890 119 + 22224390
ACAUCCAAUAUUUUAUAUCAAUGCAAUUUACGUCCACAAAAACAUCGAAUAAAACACUUUAUUUGGAUAAAGAAUAUCGGCAGAACCAUUUGCCUGCAGUAAAGUAUUUUUGCUGAUAA
.......(((((((.((((............((........))..((((((((....)))))))))))).))))))).((((((....))))))..((((((((...)))))))).... ( -21.40)
>DroEre_CAF1 112444 119 + 1
AAACCUAAUAUGAUAUUUCAAUGUUAUCUACGUGCACAUCAAAAUGAAAUAAAAUACUUUACUUGGAUGAAGAACAUCGGAAGAAUCAUUUGCCUGCAGUAAAGUAUUUUUGCUGAUAA
.....((((((((....)).))))))....((.((((((....)))....((((((((((((((((..(((.....((....))....)))..))).)))))))))))))))))).... ( -20.50)
>DroYak_CAF1 103557 119 + 1
AAACCUAAUAUUAUAUAUCAUUGCUAUCUACGUCCACGUAAACAUUGAAUAAAAUACUUUACUGGGAUAAGGAACAUCGGAAGAGCCAUUUGCCUGCAGUAAAGUAUUUUUGCUGAUAA
...............(((((..((....((((....))))..........((((((((((((((((....((....((....)).)).....))..)))))))))))))).))))))). ( -27.70)
>consensus
AAACCUAAUAUUAUAUAUCAAUGCUAUCUACGUCCACAUAAACAUCGAAUAAAAUACUUUACUUGGAUAAAGAACAUCGGAAGAACCAUUUGCCUGCAGUAAAGUAUUUUUGCUGAUAA
...............(((((..((.......(....).............(((((((((((((.((.((((.....((....))....))))))...))))))))))))).))))))). (-15.98 = -15.77 +  -0.21)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:00:16 2006