Locus 3473

Sequence ID X_DroMel_CAF1
Location 9,321,212 – 9,321,304
Length 92
Max. P 0.515530
window5683

overview

Window 3

Location 9,321,212 – 9,321,304
Length 92
Sequences 4
Columns 106
Reading direction forward
Mean pairwise identity 83.16
Mean single sequence MFE -16.95
Consensus MFE -10.48
Energy contribution -10.47
Covariance contribution -0.00
Combinations/Pair 1.22
Mean z-score -1.73
Structure conservation index 0.62
SVM decision value -0.04
SVM RNA-class probability 0.515530
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 9321212 92 + 22224390
CGCGAAUUGAACG--------AAGUAAAAUGAAUAAAUUCUUCGGGUUACUUAAGAAGUAAUCAAGAAUGUUCAGUAA------UUGAAAAAUACCUCGUUUAAUA
.....((((((((--------(.(((...(((((..(((((...(((((((.....))))))).))))))))))....------((....))))).))))))))). ( -21.60)
>DroSec_CAF1 102028 92 + 1
CGGGAAUUGUACG--------AAGUAUAAUGAAUGAAUUCUUCGGGUUACUUAAGAAGUAAUCAAGAACGUGCAGUAA------UUGAAAAAUACCUUGUUUAAUA
.(((.((((((((--------........((((.(....)))))(((((((.....))))))).....)))))))).(------((....))).)))......... ( -17.70)
>DroSim_CAF1 101033 92 + 1
CGAAAAUUGAACG--------AAGUAAAAUGAAUGAAUUCUUCUGGUUACUUAAGAAGUAAUCAAGAACGUGCAGUAA------UUGAAAAAUACCUUGUUUAAUA
.....((((((((--------(.(((...((.(((..((((..((((((((.....))))))))))))))).))....------((....))))).))))))))). ( -16.50)
>DroEre_CAF1 110866 104 + 1
CGGGAAUUGAACAUAAAUAGAAUGUAAAAUGAAUAAAUUCCUAGGGUUACUUAAGAAGUAAUCAAGAAUGUGAAAU--UGAAAAUUGAAAAAUACCUUGUUUAAAA
.(((((((..((((.....((((.............))))....(((((((.....)))))))....))))..)))--)....(((....))).)))......... ( -12.02)
>consensus
CGGGAAUUGAACG________AAGUAAAAUGAAUAAAUUCUUCGGGUUACUUAAGAAGUAAUCAAGAACGUGCAGUAA______UUGAAAAAUACCUUGUUUAAUA
.....((((((((.................(((....)))....(((((((.....))))))).....)))))))).............................. (-10.48 = -10.47 +  -0.00)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:00:15 2006