Locus 347

Sequence ID X_DroMel_CAF1
Location 1,068,745 – 1,068,837
Length 92
Max. P 0.599591
window527

overview

Window 7

Location 1,068,745 – 1,068,837
Length 92
Sequences 4
Columns 92
Reading direction forward
Mean pairwise identity 94.57
Mean single sequence MFE -25.48
Consensus MFE -23.66
Energy contribution -23.73
Covariance contribution 0.06
Combinations/Pair 1.04
Mean z-score -1.43
Structure conservation index 0.93
SVM decision value 0.13
SVM RNA-class probability 0.599591
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 1068745 92 + 22224390
CAACUGGAUAGAUUCCAGGCUAUUGGAAUGCCGCACACGUCGCAGAUUUUGGCAGUUUCUCUCCGAUUUGUGGUUACAAAUUGGUUCGAUUU
...(((((.....)))))((((..(...(((.((....)).)))..)..))))....((...(((((((((....)))))))))...))... ( -25.10)
>DroSec_CAF1 1853 92 + 1
CAACUGGAUAGAUUCCAGGCUAUUGAAAUGCCGCACACGUCGCAGAUUUUGGCAGUUUCUCUCCGAUUUGUGGUUACAAAUUGGUUGGAUUA
...(((((.....)))))((((......(((.((....)).))).....))))....(((..(((((((((....)))))))))..)))... ( -27.30)
>DroEre_CAF1 9322 92 + 1
GAACUGGAUGGAUUCCAGGCUAUUGAAAUGCCGCACACGUCGCAGAUUUUGGCAGUUUCUCUCCGAUUUGUGAUUACAAAUUGGUUCGAUUU
...(((((.....)))))((((......(((.((....)).))).....))))....((...(((((((((....)))))))))...))... ( -24.70)
>DroYak_CAF1 1894 92 + 1
GAACUGGAUGGAUUCCAGGCCAUUGAAAUGCCGCACACGUCGCAGAUUUUGGCAGUUUCUCUCCGAUUUGCGAUUACAAAUUGUUUCGAUUU
(..(((((.....)))))..)((((((((.........((((((((((..((.((.....))))))))))))))........)))))))).. ( -24.83)
>consensus
CAACUGGAUAGAUUCCAGGCUAUUGAAAUGCCGCACACGUCGCAGAUUUUGGCAGUUUCUCUCCGAUUUGUGAUUACAAAUUGGUUCGAUUU
...(((((.....)))))((((......(((.((....)).))).....))))....((...((((((((......))))))))...))... (-23.66 = -23.73 +   0.06)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:42:18 2006