Locus 3466

Sequence ID X_DroMel_CAF1
Location 9,297,666 – 9,297,760
Length 94
Max. P 0.863138
window5671

overview

Window 1

Location 9,297,666 – 9,297,760
Length 94
Sequences 4
Columns 100
Reading direction reverse
Mean pairwise identity 82.11
Mean single sequence MFE -25.85
Consensus MFE -17.38
Energy contribution -17.25
Covariance contribution -0.12
Combinations/Pair 1.10
Mean z-score -2.06
Structure conservation index 0.67
SVM decision value 0.84
SVM RNA-class probability 0.863138
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 9297666 94 - 22224390
ACAUAU----AUGUAUG--UGCAUACAUACAUAUGGUCGGAUGUAUAGUAAAUCAAGUUGGGGGCGAAAUGCAGCUGACCAGAUUUACAGGCGUGUGCAC
...(((----(((((((--(....)))))))))))(.((.((((...(((((((..((..(..((.....))..)..))..)))))))..)))).))).. ( -29.40)
>DroSec_CAF1 79337 82 - 1
ACAUAU----AUGU--------------ACAUAUGGUCGGAUGUAUAGUAAAUCAAGUUGGGGGCGAAACGCAGCUGACCAGAUUUACAGGCGUGUGGAC
.(((((----.(((--------------((((........)))))))(((((((..((..(..(((...)))..)..))..)))))))....)))))... ( -23.60)
>DroSim_CAF1 77395 82 - 1
ACAUAU----AUGU--------------ACAUAUGGUCGGAUGUAUAGUAAAUCAAGUUGGGGGCGAAACGCAGCUGACCAGAUUUACAGGCGUGUGCAC
.(((((----.(((--------------((((........)))))))(((((((..((..(..(((...)))..)..))..)))))))....)))))... ( -22.70)
>DroEre_CAF1 86217 96 - 1
AAGUAUGGGC----GUAUACUCGCACAUACAUAUGGUCGGAUGUAUAGUAAAUCAAGUUGGGGCCGAAACGCAGCUGACCAGAUUUACAGACGUGUGCAC
..(((((.((----(......))).))))).....(.((.((((...(((((((..((..(.((......))..)..))..)))))))..)))).))).. ( -27.70)
>consensus
ACAUAU____AUGU______________ACAUAUGGUCGGAUGUAUAGUAAAUCAAGUUGGGGGCGAAACGCAGCUGACCAGAUUUACAGGCGUGUGCAC
...................................((((.((((...(((((((..((..(..(((...)))..)..))..)))))))..)))).)).)) (-17.38 = -17.25 +  -0.12)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:00:04 2006