| Sequence ID | X_DroMel_CAF1 |
|---|---|
| Location | 9,296,884 – 9,296,978 |
| Length | 94 |
| Max. P | 0.697215 |
| Location | 9,296,884 – 9,296,978 |
|---|---|
| Length | 94 |
| Sequences | 5 |
| Columns | 105 |
| Reading direction | reverse |
| Mean pairwise identity | 75.22 |
| Mean single sequence MFE | -17.67 |
| Consensus MFE | -3.26 |
| Energy contribution | -4.18 |
| Covariance contribution | 0.92 |
| Combinations/Pair | 1.42 |
| Mean z-score | -1.65 |
| Structure conservation index | 0.18 |
| SVM decision value | 0.34 |
| SVM RNA-class probability | 0.697215 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 9296884 94 - 22224390 UU-----------UUAAAUUGCCAACUAAAAUAGUCUUUAAUACAUUUUUUGGUGGAUUUUUUAUUAGAUUUGCAUUCAUGUUGUGACUGUUGAAGGCAUUACAC ..-----------......((((......(((((((..(((((((.....))(..(((((......)))))..).....))))).)))))))...))))...... ( -18.30) >DroSec_CAF1 78485 104 - 1 UUUUUUUUUUGUUUUAAAUUGCCAACUAAAAUAGUCUUUAAUGCAUAA-UUGGAGGAUUUCCUAUUGGAUUUGCCUUCAUAUUGUGACUGUUGGAGGCAUUACAC .........(((((((..........)))))))(((((((((.(((((-(((((((...(((....)))....)))))).))))))...)))))))))....... ( -26.10) >DroSim_CAF1 76561 90 - 1 UU----UUUUGUUUUAAAUUGCCAACUAAAAUAGUCUUUAAUGCAUAA-UUGGAGGAUUUCCUAUUGGAUUUGCCUUCAUAUUGUGA----------CAUUACAC ..----..((((((((..........))))))))....((((((((((-(((((((...(((....)))....)))))).)))))).----------)))))... ( -20.90) >DroEre_CAF1 85369 91 - 1 CUU-----------UAAAUUGCCAACUAAAAUACUCUUUAAUACAUUU-UUGGGGGAUUUCUUAUUGAAUUUCUCUUCACAUUGCGACUGGCGAAAUCAUUAC-- ...-----------....((((((.((((((...............))-))))((((.(((.....)))..)))).............)))))).........-- ( -13.86) >DroYak_CAF1 78516 100 - 1 UUUUUGUUUU--AUUAAAUUGCCAACUAAAAUACUCUAUAAUACAUUU-UUGGCGAAUUUCCUAUUGAAUUUCACAUCAUAUUGCGACAGGUUAAAUCAUUAC-- ..((((((.(--(.((....(((((.......................-)))))(((.(((.....))).)))......)).)).))))))............-- ( -9.20) >consensus UUU___UUUU___UUAAAUUGCCAACUAAAAUAGUCUUUAAUACAUUU_UUGGAGGAUUUCCUAUUGGAUUUGCCUUCAUAUUGUGACUGGUGAAAGCAUUACAC ...........................................(((....((((((...(((....)))....))))))....)))................... ( -3.26 = -4.18 + 0.92)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:00:03 2006