Locus 3462

Sequence ID X_DroMel_CAF1
Location 9,281,477 – 9,281,576
Length 99
Max. P 0.908240
window5667

overview

Window 7

Location 9,281,477 – 9,281,576
Length 99
Sequences 6
Columns 108
Reading direction forward
Mean pairwise identity 76.01
Mean single sequence MFE -14.64
Consensus MFE -9.12
Energy contribution -9.32
Covariance contribution 0.20
Combinations/Pair 1.27
Mean z-score -1.77
Structure conservation index 0.62
SVM decision value 1.06
SVM RNA-class probability 0.908240
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 9281477 99 + 22224390
---CAUUCAAAGUUUAGAAAUUAUAU------AAAUAAUAUACACCAUCAUAUCUAAUACUUAUGAUCAUUUAGAGGAAAUUCAAAUUUUACUGCCCACUCGGGCAAA
---.....(((((((.(((..(((((------.....)))))..((.(((((.........)))))((.....))))...))))))))))..(((((....))))).. ( -15.10)
>DroSec_CAF1 63755 99 + 1
---CAUUCAAAGUUUAGAAAUUAUAU------AAAUAAUAUACACCAUCAUAUUUAAUACUUUUGAUCACUUAGAGGAAAAUCAAAUUUUACUGCCCACUCGGGCAAA
---.....(((((((.((...(((((------.....))))).................(((((((....)))))))....)))))))))..(((((....))))).. ( -14.30)
>DroSim_CAF1 61245 99 + 1
---CAUUCAAAGUUUAGAAAUUAUAU------AAAUAAUGUACACCAUCAUAUUUAAUACUUUUGAUCAUUUAGAGGAAAUUCAAAUUUUACUGCCCACUCGGGCAAA
---.....(((((((.(((......(------(((((.((........))))))))...(((((((....)))))))...))))))))))..(((((....))))).. ( -17.50)
>DroEre_CAF1 70395 108 + 1
UGUCAUUCCAAGUUUAGAAUUAAUAUACUCGUAAAUAAUAAAUACCAACAUUUUUAAUACUUUUGAUCAUUUUGAAGAAAUUCAAAUUUUACAGCCCACUCGGGCAAA
.((((....((((((((((................................)))))).)))).))))...((((((....)))))).......((((....))))... ( -15.15)
>DroWil_CAF1 69123 83 + 1
---AUGACGAAUUU---CAAUUAUAU------AUUUAAU--------UCGUAUUCAUUGCUUUUAG-----CAAAAGAACUACAACUUUAACUGCUCAUCCUAGCCAA
---...(((((((.---.(((.....------))).)))--------)))).......(((...((-----((((((........))))...))))......)))... (  -9.00)
>DroYak_CAF1 62511 99 + 1
---CAUUCAAAGAUUAGAAUUUAUAC------AAAUAAUAAAUACCAUCAUAUUUAAUGCUUUUGAUCAUUUAGAAGAUAUACAAAUUUUACUGCCCGCUCGGGCAAA
---...........((((((((....------......((((((......))))))...(((((((....)))))))......)))))))).(((((....))))).. ( -16.80)
>consensus
___CAUUCAAAGUUUAGAAAUUAUAU______AAAUAAUAUACACCAUCAUAUUUAAUACUUUUGAUCAUUUAGAAGAAAUUCAAAUUUUACUGCCCACUCGGGCAAA
...........................................................(((((((....)))))))................((((....))))... ( -9.12 =  -9.32 +   0.20)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:00:00 2006