Locus 346

Sequence ID X_DroMel_CAF1
Location 1,068,032 – 1,068,144
Length 112
Max. P 0.589800
window526

overview

Window 6

Location 1,068,032 – 1,068,144
Length 112
Sequences 6
Columns 118
Reading direction forward
Mean pairwise identity 81.88
Mean single sequence MFE -35.43
Consensus MFE -24.88
Energy contribution -24.52
Covariance contribution -0.36
Combinations/Pair 1.28
Mean z-score -1.47
Structure conservation index 0.70
SVM decision value 0.11
SVM RNA-class probability 0.589800
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 1068032 112 + 22224390
UGCUCUGGGCCACAAGGGCCUGGGUCACUUCAGCUACACGGCCAGCAAGCCACAGGCUCUCCACACCGACGUUCU------CAGCUCUGCCCACCACUCCGUCCAGUCCGGAGCACCC
((((((((((....(((((((((((.......(((....)))......))).)))))))).......((((....------..................))))..))))))))))... ( -36.97)
>DroPse_CAF1 4866 111 + 1
UGCUUUGGGCCACAAGGGUCUGGGCCACUUUAGCUACACAGCCAACAAGCCACAGGCCCUGCACACCGAUGUCCUGUCCAACAGCGGUGGCCACCAU------CAUUCCAAUG-AUAU
.......((((...(((((((((((.......(((....)))......))).))))))))....((((.(((........))).))))))))...((------(((....)))-)).. ( -37.42)
>DroSec_CAF1 1128 112 + 1
UGCUCUGGGCCACAAGGGCCUGGGCCACUUCAGCUACACGGCCAGCAAGCCACAGGCUCUCCACACCGACGUUCU------CAGCUCUGCCCACCACUCCGUCCAGUCCGGAGCACCC
((((((((((....(((((((((((.......(((....)))......))).)))))))).......((((....------..................))))..))))))))))... ( -38.57)
>DroEre_CAF1 8612 112 + 1
UGCCCUGGGCCACAAGGGACUGGGCCACUUCAGCUACACGGCCAGCAAGCCACAGGCCCUCCACACCGACGUCCU------CAGCUCUGCCCACCACUCCGUUCAGUCCGGCGCACCU
(((.((((((...((.(((.(((((......((((....(((......)))..(((.(.((......)).).)))------.))))..)))))....))).))..)))))).)))... ( -32.30)
>DroYak_CAF1 1206 112 + 1
UGCCCUGGGCCACAAGGGACUGGGCCACUUCACUUACACAGCCAGCAAGCCACAGGCCCUCCACACCGACGUCCU------CAGCUCUGCCCACCACGCCACGCAGUCCGGAGCACCC
(((.((((((.....(((((.(((((......(((.(.......).))).....)))))((......)).)))))------..((...((.......))...)).)))))).)))... ( -27.80)
>DroPer_CAF1 8961 111 + 1
UGCGUUGGGCCACAAGGGUCUGGGCCACUUUAGCUACACAGCCAACAAGCCACAGGCCCUGCACACCGAUGUCCUGUCCAACAGCGGUGGCCACCAU------CAUUCCAAUG-AUAU
..(((((((.....(((((((((((.......(((....)))......))).))))))))((.(((((.(((........))).)))))))......------...)))))))-.... ( -39.52)
>consensus
UGCUCUGGGCCACAAGGGACUGGGCCACUUCAGCUACACAGCCAGCAAGCCACAGGCCCUCCACACCGACGUCCU______CAGCUCUGCCCACCACUCCGU_CAGUCCGGAGCACCC
(((.((((((....(((((((((((.......(((....)))......))).))))))))..((......)).................................)))))).)))... (-24.88 = -24.52 +  -0.36)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:42:17 2006