Locus 3458

Sequence ID X_DroMel_CAF1
Location 9,274,078 – 9,274,170
Length 92
Max. P 0.645167
window5660

overview

Window 0

Location 9,274,078 – 9,274,170
Length 92
Sequences 4
Columns 92
Reading direction reverse
Mean pairwise identity 95.11
Mean single sequence MFE -28.33
Consensus MFE -23.05
Energy contribution -23.55
Covariance contribution 0.50
Combinations/Pair 1.00
Mean z-score -2.00
Structure conservation index 0.81
SVM decision value 0.23
SVM RNA-class probability 0.645167
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 9274078 92 - 22224390
CAGCUUGGAAACCUGUGCAAACCUUGGCCAGGAAUCUACAAUCCUGGGAAAAUUACGUAGGAUCCGGGAUCCAUUUGUAGGCCGAGCAACCA
..((((((...((((.((........))))))..((((((((((((((..............)))))))).....))))))))))))..... ( -30.44)
>DroSec_CAF1 56607 92 - 1
CAACUUGGAAUCCUGUGCAAACCUUGGCCAGGAAUCUACAAUCCUGGGAAAAUUACGUAGGAUCCGGGAUCCAUUUGUAGGCCGAGCAACCA
...(((((..(((((.((........))))))).((((((((((((((..............)))))))).....)))))))))))...... ( -27.44)
>DroEre_CAF1 62830 92 - 1
CAACUUGGAAUCCUGUGCAAGCCCGGGCCAGGAAUCUACAAUCCUGUGAAAAUUACGUAGGAUCCGUGAUCCAUUUGUAGGCCGAGCAACCA
...(((((..(((((.((........))))))).(((((((....((((...))))...(((((...)))))..))))))))))))...... ( -26.40)
>DroYak_CAF1 53851 92 - 1
CAACUUGGAAUCCUGUGCAAACCUUGGGCAGGAAUCUACAAUCCUGGGAAAAUUACAUAGGAUCCGGGAUCCAUUUGUAGGCCGAGCAACCA
...(((((..((((((.((.....)).)))))).((((((((((((((..............)))))))).....)))))))))))...... ( -29.04)
>consensus
CAACUUGGAAUCCUGUGCAAACCUUGGCCAGGAAUCUACAAUCCUGGGAAAAUUACGUAGGAUCCGGGAUCCAUUUGUAGGCCGAGCAACCA
...(((((..(((((.((........))))))).(((((((((....))..........(((((...)))))..))))))))))))...... (-23.05 = -23.55 +   0.50)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:59:54 2006