Locus 3457

Sequence ID X_DroMel_CAF1
Location 9,263,342 – 9,263,444
Length 102
Max. P 0.870059
window5659

overview

Window 9

Location 9,263,342 – 9,263,444
Length 102
Sequences 5
Columns 107
Reading direction forward
Mean pairwise identity 69.67
Mean single sequence MFE -16.91
Consensus MFE -4.46
Energy contribution -5.06
Covariance contribution 0.60
Combinations/Pair 1.00
Mean z-score -2.02
Structure conservation index 0.26
SVM decision value 0.87
SVM RNA-class probability 0.870059
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 9263342 102 + 22224390
UCACACUUUCAACAUUUCGUUGCUCUGCUCUCUGCUUCACCUUUUUUAAUCCCCAGUUUACUGCUAAUCUGAUAA-----GGUGAAAGUGCAUUUCUUUAUUAAAUU
....................(((.((((.....))((((((((.((.......(((....))).......)).))-----)))))))).)))............... ( -16.84)
>DroSec_CAF1 46518 85 + 1
----------------UUAUAUUUCUGCUCUCUGCUUCACCUU-UUUAAUACUCAGUUUACUGCGAAUCUGAUAA-----GGUGAAAGUGCAUUUCUUUAUUAAAUU
----------------.........(((.((....((((((((-.(((((.(.(((....))).).)).))).))-----)))))))).)))............... ( -15.80)
>DroSim_CAF1 45834 85 + 1
----------------UUAUAUUUCUGCUCUCUGCUUCACCUU-UUUAAUCCCCAGUUUACUGCUAAUCUGAUAA-----GGUGAAAGUGCAUUUCUUUAUUAAAUU
----------------.........(((.((....((((((((-.(((.....(((....)))......))).))-----)))))))).)))............... ( -14.90)
>DroEre_CAF1 51174 79 + 1
UGGUACUAU----------------------CUGCUGCAGCUU-UCUAAGCCGCAGUUUACUGCUAAUCUGAUAC-----GGUGAAGGUGCAUUGCUUUAUUAAAUU
..(((((..----------------------..(((((.(((.-....))).)))))((((((.((......)))-----))))).)))))................ ( -18.20)
>DroYak_CAF1 43552 103 + 1
UCAUACUUUC-ACAUUACGA--UGCUUGUCUCAGCUUCACCUG-CAUAAUUCCCAGCUUACUGCUGAUCUGAUCCGAUAAGGGGAAAAUGCAUUUCUUUAUUAAAUU
..........-.......((--.(((......))).))...((-(((..((((((((.....))).(((......)))..)))))..)))))............... ( -18.80)
>consensus
U___ACU_U_______UCAU__UUCUGCUCUCUGCUUCACCUU_UUUAAUCCCCAGUUUACUGCUAAUCUGAUAA_____GGUGAAAGUGCAUUUCUUUAUUAAAUU
.................................((((((((............(((....)))(......).........))))))...))................ ( -4.46 =  -5.06 +   0.60)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:59:53 2006