| Sequence ID | X_DroMel_CAF1 |
|---|---|
| Location | 9,262,200 – 9,262,299 |
| Length | 99 |
| Max. P | 0.864236 |
| Location | 9,262,200 – 9,262,299 |
|---|---|
| Length | 99 |
| Sequences | 4 |
| Columns | 112 |
| Reading direction | reverse |
| Mean pairwise identity | 83.96 |
| Mean single sequence MFE | -35.77 |
| Consensus MFE | -26.15 |
| Energy contribution | -26.15 |
| Covariance contribution | 0.00 |
| Combinations/Pair | 1.15 |
| Mean z-score | -2.01 |
| Structure conservation index | 0.73 |
| SVM decision value | 0.84 |
| SVM RNA-class probability | 0.864236 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 9262200 99 - 22224390 AACCGAAGUGAAGUGGCUGCCAAGUGGAAAAGUGGAGCGCUGCGUCGGUGGAUAUAGCAUUUCCAUUGCCCAUUCC--CUUACCAUCCCUUUCAUUUCUCG----------- ....(((((((((.((.((..(((.((((.(((((((.((((..((....))..))))..))))))).....))))--)))..)).)).)))))))))...----------- ( -31.10) >DroSec_CAF1 45446 103 - 1 AACCGAAGUGAAGUGGCUGCCAAGUGGAAAAGUGGAGCGCUGCGACGAUGGAUGUAGCAUUUCCAUUGCCCAUUGCCCAUUCCCUUCCCUUCCACUUCGCGCG--------- .......(((((((((..(..(((.(((...((((.(((.((.(.(((((((.........))))))).))).)))))))))))))..)..)))))))))...--------- ( -37.50) >DroSim_CAF1 44745 103 - 1 AACCGAAGUGAAGUGGCUGCCAAGUGGAAAAGUGGAGCGCUGCGGCGAUGGAUGUAGCAUUUCCAUUGCCCAUUGCCCAUUCCCUUCCCUUCAAUUUCGCGCG--------- ...((((((((((.((.....(((.(((...((((.(((.((.(((((((((.........))))))))))).))))))))))))))))))).))))))....--------- ( -38.40) >DroEre_CAF1 50033 107 - 1 AACCGAGAUGAAGUGACUGCCAAGUGGAAAAGUGGAGCGCUGCGGCGGUGGAUAUAGCAUUUCCAUUGCC-AUUGC-CAUUGCCAUCCCUUCCAUCUCGU---AAAAAGCAA ...(((((((.((((.((.(((..(....)..)))))))))..((((((((.....(((.......))).-....)-)))))))........))))))).---......... ( -36.10) >consensus AACCGAAGUGAAGUGGCUGCCAAGUGGAAAAGUGGAGCGCUGCGGCGAUGGAUAUAGCAUUUCCAUUGCCCAUUGC_CAUUCCCAUCCCUUCCAUUUCGCG___________ ...(((((((.((((.((.(((..(....)..)))))))))..(((((((((.........)))))))))......................)))))))............. (-26.15 = -26.15 + 0.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:59:52 2006