| Sequence ID | X_DroMel_CAF1 |
|---|---|
| Location | 9,252,765 – 9,252,864 |
| Length | 99 |
| Max. P | 0.538922 |
| Location | 9,252,765 – 9,252,864 |
|---|---|
| Length | 99 |
| Sequences | 6 |
| Columns | 107 |
| Reading direction | forward |
| Mean pairwise identity | 79.02 |
| Mean single sequence MFE | -20.49 |
| Consensus MFE | -14.09 |
| Energy contribution | -14.62 |
| Covariance contribution | 0.53 |
| Combinations/Pair | 1.05 |
| Mean z-score | -1.13 |
| Structure conservation index | 0.69 |
| SVM decision value | 0.01 |
| SVM RNA-class probability | 0.538922 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 9252765 99 + 22224390 A-------UAAAAA-AAAAAUGAACAAACGACGUGAGAAUAAAUUGACAAUUUCAUCAAUUUGUCGUGUCGACGUGUUUACCACUUUAGCUUUUAUCAAACGGUAGG .-------......-.....((((((..((((((((...((((((((........))))))))))))))))...))))))............(((((....))))). ( -17.60) >DroPse_CAF1 38296 92 + 1 ----------AAAA-AGAAAUGAACAAACGACGUGUGAAUAAAUUGACAAUUUCAUCAAUUUGUCGUGUCGACGUGUUAACCAUUCAAGCCCUCUCCAGGUGG---- ----------....-.(((...((((..(((((((...(((((((((........))))))))))))))))...)))).....)))..(((.......)))..---- ( -16.30) >DroSim_CAF1 34478 107 + 1 AUGCCUGGUAAAAAAAAAAAUGAACAAACGACGUGAGAAUAAAUUGACAAUUUCAUCAAUUUGUCGUGUCGACGUGUUUACCACUUUAGCUUUUGUCAAACGGUAGG .((((((..((((.......((((((..((((((((...((((((((........))))))))))))))))...))))))..........))))..))...)))).. ( -20.83) >DroEre_CAF1 40524 102 + 1 AUGGCUGGCAAA-----AAAUGAACAAACGAUGUGAGAAUAAAUUGACAAUUUCAUCAAUUUGUCGUGUCGACGUGUUUACCACUUUAGCGUCUAUCAAACGGUAGA ...(((((....-----...((((((..(((..(((...((((((((........)))))))))))..)))...)))))).....))))).((((((....)))))) ( -23.80) >DroYak_CAF1 32197 103 + 1 ACGGCUGGCAAA----AAAAUCAACAAACGACGUGAGAAUAAAUUGACAAUUUCAUCAAUUUGUCGUGUCGACGUGUUUACCACUUCAGCUUUUAUCAAACGUUAGG ..((((((....----............((((((((...((((((((........))))))))))))))))..(((.....))).))))))................ ( -20.00) >DroAna_CAF1 42125 88 + 1 AAGGC----------AAAAAUGAACAAACGACGUGCGAAUAAAUUGACAAUUCCAUCAAUUUGUACUGUCGACGUGUUUACCAUUUUAGCCU---------GGUCGA .((((----------.((((((((((..((((((((((((..((.((....)).))..)))))))).))))...))))...)))))).))))---------...... ( -24.40) >consensus A_GGC____AAA___AAAAAUGAACAAACGACGUGAGAAUAAAUUGACAAUUUCAUCAAUUUGUCGUGUCGACGUGUUUACCACUUUAGCUUUUAUCAAACGGUAGG ....................((((((..(((((((...(((((((((........))))))))))))))))...))))))........................... (-14.09 = -14.62 + 0.53)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:59:50 2006