| Sequence ID | X_DroMel_CAF1 |
|---|---|
| Location | 9,248,543 – 9,248,651 |
| Length | 108 |
| Max. P | 0.938810 |
| Location | 9,248,543 – 9,248,651 |
|---|---|
| Length | 108 |
| Sequences | 3 |
| Columns | 109 |
| Reading direction | reverse |
| Mean pairwise identity | 82.41 |
| Mean single sequence MFE | -29.89 |
| Consensus MFE | -21.40 |
| Energy contribution | -21.73 |
| Covariance contribution | 0.33 |
| Combinations/Pair | 1.00 |
| Mean z-score | -2.47 |
| Structure conservation index | 0.72 |
| SVM decision value | 1.27 |
| SVM RNA-class probability | 0.938810 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 9248543 108 - 22224390 AACGCAAAAAAAAAUACUGCAUA-GCCAUAGGCCAAGUGAGCAUACCCGGCACAUACCCUAGGCCGCAGGCUGUUCAGUGGAAGGGGUGCAAUAAAAAAUUGUAAAAUA ...(((........(((((.(((-(((...((((.((((.((.......)).))....)).))))...)))))).))))).......)))................... ( -28.96) >DroSec_CAF1 31647 106 - 1 AAGCCAA---AAAAUACCGAAUAAGCCAUAUGCAAGGCGAGCAUACCCGGCAGAUACCCUGGGCCGCAGGCUGUUCGGUGGAAGGGGUGCAAUAAAAAAUUGUAAAAUA ..(((..---....(((((((((.(((.(((((.......)))))(((((........))))).....)))))))))))).....)))(((((.....)))))...... ( -33.40) >DroEre_CAF1 36543 100 - 1 AA---------GCCCAUUGCAUGAGCCAUAUGCAAACGGAGCAUACCCGGCAGAUACCCUAGGCCGCAGGCAGUUCGGUGGAAGGGGUGCAAUAAAAAAUUGUAAAAUA ..---------....(((((((..(((.(((((.......)))))...))).....((((...((((.((....)).)))).)))))))))))................ ( -27.30) >consensus AA__CAA___AAAAUACUGCAUAAGCCAUAUGCAAAGCGAGCAUACCCGGCAGAUACCCUAGGCCGCAGGCUGUUCGGUGGAAGGGGUGCAAUAAAAAAUUGUAAAAUA ........................(((.(((((.......)))))...)))....(((((...((((.((....)).))))..)))))(((((.....)))))...... (-21.40 = -21.73 + 0.33)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:59:49 2006