Locus 3451

Sequence ID X_DroMel_CAF1
Location 9,246,218 – 9,246,320
Length 102
Max. P 0.661470
window5653

overview

Window 3

Location 9,246,218 – 9,246,320
Length 102
Sequences 5
Columns 110
Reading direction reverse
Mean pairwise identity 77.39
Mean single sequence MFE -33.06
Consensus MFE -16.64
Energy contribution -18.56
Covariance contribution 1.92
Combinations/Pair 1.17
Mean z-score -1.89
Structure conservation index 0.50
SVM decision value 0.27
SVM RNA-class probability 0.661470
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 9246218 102 - 22224390
CCGCCGUAUGGCCGUCUCUUUCGCUUUCU--------CUGUGUGUGAUGGCGAGACAAAGUAAACUUUGGCGCGCAGACACGCGUAAUUAAAUGCAACAACAGAGCCGAG
..(((....)))........(((....((--------((((((((..(((((...(((((....))))).))).)).))))((((......))))....)))))).))). ( -30.50)
>DroGri_CAF1 32751 90 - 1
------------UGUCAGUGUGUGUGUGU--------GUGUAUGUCAUGGCGAGUUAAAGUAAACUUCGCUGUGCAGACACGCGUAAUUAAAUGCAACAACAGCAACGAG
------------..((..(((...(((((--------((((.((.(((((((((((......))).)))))))))).))))))(((......))).)))...)))..)). ( -27.90)
>DroSec_CAF1 28832 101 - 1
CCGCC-UAUGGCCGUGUCUUUCGCUUUCU--------CUGUGUGUGAUGGCGAGACAAAGUAAACUUUGGCGCGCUGACACGCGUAAUUAAAUGCAACAACAGAGCCGAG
.....-..((((.(((.....)))....(--------(((((((((.(((((...(((((....)))))...))))).)))))(((......)))....))))))))).. ( -30.80)
>DroEre_CAF1 34296 101 - 1
CCGCC-UAUGGCCGUCUCUUUCGCUUUCU--------CUGUGUGUGUUGGCGAGACAAAGUAAACUUUGGCGCGCAGACACGCGUAAUUAAAUGCAACAACAGAGGCGAG
..(((-...)))........((((...((--------(((((((((((.(((...(((((....)))))...))).)))))))(((......)))....)))))))))). ( -35.40)
>DroWil_CAF1 29361 105 - 1
CAGUC-UGUC----UCUCUCUCGGUUUUCCUGUGUGUUUGUGUGCCAUGGCGAGACAAAGUAAACUUUAGCGCGCAGACACGCGUAAUUAAAUGCAACAACCGAGGAGAG
.....-...(----((((.(((((((.....((((((((((((((...(......)((((....)))).))))))))))))))(((......)))...)))))))))))) ( -40.70)
>consensus
CCGCC_UAUGGCCGUCUCUUUCGCUUUCU________CUGUGUGUGAUGGCGAGACAAAGUAAACUUUGGCGCGCAGACACGCGUAAUUAAAUGCAACAACAGAGCCGAG
............((((((.....................((((((....(((...(((((....)))))...)))..))))))(((......))).......)))))).. (-16.64 = -18.56 +   1.92)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:59:48 2006