Locus 3450

Sequence ID X_DroMel_CAF1
Location 9,243,787 – 9,243,901
Length 114
Max. P 0.571198
window5652

overview

Window 2

Location 9,243,787 – 9,243,901
Length 114
Sequences 4
Columns 114
Reading direction forward
Mean pairwise identity 93.27
Mean single sequence MFE -23.95
Consensus MFE -18.47
Energy contribution -19.54
Covariance contribution 1.06
Combinations/Pair 1.11
Mean z-score -1.88
Structure conservation index 0.77
SVM decision value 0.08
SVM RNA-class probability 0.571198
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 9243787 114 + 22224390
AAAUUUCAUUUUGCUUGAACCUUCAUUUCAUUUGUGCCCGCAUUUGUCGGGCAUUUUUAAGCGAGUCUCUGGCCUUUUCACUCCUCCUCGCUUUCCGCGAAAACCCCUCAUCAA
........((((((...................((((((((....).)))))))....(((((((.....((..........))..)))))))...))))))............ ( -24.30)
>DroSec_CAF1 26462 113 + 1
AAAUUUCAUUUUGCUUGAACCUUCAUUUCAUUUGUGCCCGCAUUUGUCGGGCAUUUUUAAGCGAGUCUCCGGCCU-UCCACUCCGCCCGGCAUUCCGCGAAAACCCCUCAUCAA
...((((.....(((((((..............((((((((....).))))))).)))))))((((..((((.(.-........).)))).))))...))))............ ( -24.66)
>DroEre_CAF1 31941 114 + 1
AAAUUUCAUUUUGCUUGAACCUUCAUUUCAUUUGUGCCCGCAUUUGUCGGGUAUUUUUAAGCGAGGCUCUGGCCUUUCCACUCCGCCCGGUUUUCCGCGAAAACCCCUCAUCAA
............(((((((..............((((((((....).))))))).)))))))((((....(((...........))).(((((((...)))))))))))..... ( -28.06)
>DroYak_CAF1 27561 114 + 1
AAAUUUCAUUUAGCUUGAACCUUCAUUUCAUUUGUGCCCGCAUUUGUCGGGAAUUUUUAAGCGAGUCUCUGGCCCUUUCACUUCGCCCCACUUUCCGCGAAAACCCCUCAUCAA
...((((.....(((((((..(((....((..(((....)))..))....)))..)))))))((((....(((...........)))..)))).....))))............ ( -18.80)
>consensus
AAAUUUCAUUUUGCUUGAACCUUCAUUUCAUUUGUGCCCGCAUUUGUCGGGCAUUUUUAAGCGAGUCUCUGGCCUUUCCACUCCGCCCCGCUUUCCGCGAAAACCCCUCAUCAA
...((((.....(((((((..............((((((((....).))))))).)))))))((((.((.(((...........))).)).))))...))))............ (-18.47 = -19.54 +   1.06)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:59:47 2006