| Sequence ID | X_DroMel_CAF1 |
|---|---|
| Location | 9,239,848 – 9,239,952 |
| Length | 104 |
| Max. P | 0.777177 |
| Location | 9,239,848 – 9,239,952 |
|---|---|
| Length | 104 |
| Sequences | 4 |
| Columns | 104 |
| Reading direction | forward |
| Mean pairwise identity | 93.41 |
| Mean single sequence MFE | -22.62 |
| Consensus MFE | -17.38 |
| Energy contribution | -18.38 |
| Covariance contribution | 1.00 |
| Combinations/Pair | 1.00 |
| Mean z-score | -2.59 |
| Structure conservation index | 0.77 |
| SVM decision value | 0.55 |
| SVM RNA-class probability | 0.777177 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 9239848 104 + 22224390 GGGCAGGAAAACGGAAUUGAAUUAUUUGAUUGCCGGAGAAAUGCAUCUUAAAAUAUUAAUUGGAAUAUUUUUGAAUGCAAAAGAGCGAAAAGAGGAAGCUCAGG .(((((..(((..(.......)..)))..))))).......(((((...((((((((......))))))))...)))))...((((...........))))... ( -20.90) >DroSec_CAF1 21692 104 + 1 GGGCAGGAAAACUGAAUUGAAUUAUUUGAUUGCCGGAGAAAUGCUUCUUAAAAUAUUAAUUGGAAUAUUUUUGAAUGCAGAAGAGCGAAAAGAGGAAGCUCAGG .(((((..(((.(((......))))))..))))).......((((((..((((((((......)))))))).))).)))...((((...........))))... ( -20.30) >DroEre_CAF1 25335 102 + 1 GGGCAGGAAAAAUGAAUUGAAUUAUUUGAUUGCCGGAGAACUGCUUCUUAAAAUAUUAAUUGGAAUAUU--UAAAUGCAGAAGAGCGAAAAGAGGAAGCUCCGU .(((((...((((((......))))))..)))))((((.....((((((.(((((((......))))))--)...(((......)))..))))))...)))).. ( -25.80) >DroYak_CAF1 23709 102 + 1 GGGCAGGAAAAAUGAAUUGAAUUAUUUGAUUGCCGGAGAAAUGCUUCUUAAAAUAUUAAUUGGAAUAUU--UAAAUGCAGAAAAGCGAAAAGAGGAAGCACCGG .(((((...((((((......))))))..)))))((.....((((((((.(((((((......))))))--)...(((......))).....)))))))))).. ( -23.50) >consensus GGGCAGGAAAAAUGAAUUGAAUUAUUUGAUUGCCGGAGAAAUGCUUCUUAAAAUAUUAAUUGGAAUAUU__UAAAUGCAGAAGAGCGAAAAGAGGAAGCUCAGG .(((((...((((((......))))))..)))))........(((((((..((((((......))))))......(((......))).....)))))))..... (-17.38 = -18.38 + 1.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:59:46 2006