| Sequence ID | X_DroMel_CAF1 |
|---|---|
| Location | 9,235,973 – 9,236,067 |
| Length | 94 |
| Max. P | 0.531531 |
| Location | 9,235,973 – 9,236,067 |
|---|---|
| Length | 94 |
| Sequences | 3 |
| Columns | 101 |
| Reading direction | forward |
| Mean pairwise identity | 75.34 |
| Mean single sequence MFE | -19.97 |
| Consensus MFE | -11.66 |
| Energy contribution | -12.22 |
| Covariance contribution | 0.56 |
| Combinations/Pair | 1.19 |
| Mean z-score | -1.64 |
| Structure conservation index | 0.58 |
| SVM decision value | -0.00 |
| SVM RNA-class probability | 0.531531 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 9235973 94 + 22224390 -AAACAACAAGCAAAUUUAAACUCUGGCAUCAACUGAUAGGCAGCAACAACAU---U---UAGAGGUGCUCAAUUGGCUAUUAAAUAGCUAGAGAGAGAAA -....................(((((((......((((((.(((......(((---(---....)))).....))).))))))....)))))))....... ( -17.30) >DroEre_CAF1 21567 81 + 1 -AAACAACAAGCAAAUUUAAACUCUGGCAUAAACUGAUAGGCGGC-----CAGUGGU---AGGAGGUGCUCACUCGGCUACUAAAUAGCU----------- -........((((..(((...(.(((((.....(.....)...))-----))).)..---.)))..)))).....(((((.....)))))----------- ( -16.80) >DroYak_CAF1 19800 98 + 1 AAAACAACAAGCAAAUUUAAACUCUGGCAUAAACUGAUAGGCAGCAACAACAGUGCCCAGUGGAGAUGCUCACCUGGCUACUAAAUAGCCAGAGCUAG--- .........(((.............(((((..((((...((((.(.......)))))))))....)))))...(((((((.....))))))).)))..--- ( -25.80) >consensus _AAACAACAAGCAAAUUUAAACUCUGGCAUAAACUGAUAGGCAGCAACAACAGUG_U___UGGAGGUGCUCACUUGGCUACUAAAUAGCUAGAG__AG___ .........((((..((((....(((.......(((.....)))......))).......))))..))))...(((((((.....)))))))......... (-11.66 = -12.22 + 0.56)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:59:44 2006