Locus 344

Sequence ID X_DroMel_CAF1
Location 1,063,944 – 1,064,064
Length 120
Max. P 0.622817
window523

overview

Window 3

Location 1,063,944 – 1,064,064
Length 120
Sequences 5
Columns 120
Reading direction forward
Mean pairwise identity 76.75
Mean single sequence MFE -33.77
Consensus MFE -17.46
Energy contribution -18.82
Covariance contribution 1.36
Combinations/Pair 1.16
Mean z-score -1.81
Structure conservation index 0.52
SVM decision value 0.18
SVM RNA-class probability 0.622817
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 1063944 120 + 22224390
AGGAAUAUCCGCAGCAAUACCAGCAACCCUCCGUCCUGGUGGGCUUAUUUACUCCUCAACUGCAGGCCCAGCCACUGUCAGCUCCUCCUCCGCAGGCUGGACAUUUUAGCCUGCCCUUCA
((((......((((....(((((..((.....)).)))))((((((.................)))))).....)))).......))))..((((((((((...))))))))))...... ( -32.05)
>DroSec_CAF1 12911 120 + 1
AGGCAUAUCUGCAGCAAUACCAGCAACCCCCCGUCCUGGUGGGCUUAUUCACUCCUCAACUGCAGGCCCAGCCACUGGCAGCUCCUCCUCCGCAGGCUGGGCAUUUUAGCCUGCCCUUCA
((((....((((((....(((((..((.....)).)))))(((........))).....))))))((((((((..(((.((......)))))..))))))))......))))........ ( -41.30)
>DroSim_CAF1 13872 105 + 1
---------------AAUACCAGCAACCCUCCGUCCUGGUGGGAUUAUUCACUCCUCAACUGCAGGCCCAGCCACUGGCAGCACCUCCGCCGCAGGCUGGGCAUUUUAGCCUGCCCUUCA
---------------.......(((.(((.((.....)).)))......................((((((((..((((.........))))..)))))))).........)))...... ( -33.10)
>DroYak_CAF1 15424 120 + 1
AGGCAAAUCCGGUGCAGUUCCAGCAUCCGUCCGUCCUGGUGGGCUUAUUCACUGCCCAACUGCAGGCCCCGCCGUUGGCAGCUCCUCCUCCACAGGCAGGUCACUUCAGCCUGCCCUUCA
((((........(((((((((((.((......)).)))).((((.........)))))))))))((((..(((..(((.((......)))))..))).))))......))))........ ( -39.30)
>DroAna_CAF1 16871 117 + 1
AGCAAUAUCCUCCACAGUAUCCUCAGCAACCUGUCCUCUUUGGCUUAUUUGCUCCUCAGUUGCAAGUUCAUCCUCUGGCCGCUCCU---CCCCAGGCCGGACACUUCACUCUGCCCUUCA
(((((......(((.((......(((....)))....)).))).....)))))........((((((......(((((((......---.....)))))))......))).)))...... ( -23.10)
>consensus
AGGAAUAUCCGCAGCAAUACCAGCAACCCUCCGUCCUGGUGGGCUUAUUCACUCCUCAACUGCAGGCCCAGCCACUGGCAGCUCCUCCUCCGCAGGCUGGACAUUUUAGCCUGCCCUUCA
................................((((....)))).................((((((((((((..(((...........)))..))))))........))))))...... (-17.46 = -18.82 +   1.36)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:42:15 2006